Factsheet for Solyc02g062910.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36680.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT4G36680.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT4G36680.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT4G36680.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039992	Potato	cytosol	91.59	92.7
Solyc02g085550.1.1	Tomato	plastid	41.59	70.61
VIT_04s0023g01460.t01	Wine grape	mitochondrion	64.18	64.49
AT4G36680.1	Thale cress	mitochondrion	56.25	56.8
CDY24774	Canola	mitochondrion	55.05	56.27
Bra010568.1-P	Field mustard	mitochondrion	54.57	55.77
CDY35471	Canola	mitochondrion	53.85	55.04
AT2G18520.1	Thale cress	mitochondrion	54.57	54.31
Bra037216.1-P	Field mustard	mitochondrion	52.88	52.51
CDY67618	Canola	mitochondrion	52.88	52.51
CDY66741	Canola	mitochondrion	52.4	52.03
Solyc02g085650.2.1	Tomato	plastid	75.72	48.76
GSMUA_Achr1P01950_001	Banana	mitochondrion	40.62	43.78
Os02t0633200-01	Rice	mitochondrion	36.3	33.19
TraesCS6D01G214000.1	Wheat	mitochondrion	36.06	32.47
TraesCS6B01G260000.1	Wheat	mitochondrion	36.06	32.47
TraesCS6A01G221200.1	Wheat	mitochondrion	36.06	32.47
Zm00001d017317_P001	Maize	mitochondrion	36.3	32.06
EES05467	Sorghum	mitochondrion	35.82	31.84
HORVU6Hr1G059290.1	Barley	cytosol	36.54	31.6
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	29.33	31.52
Solyc03g031460.1.1	Tomato	plastid	26.92	29.55
Solyc10g005280.1.1	Tomato	mitochondrion	27.64	28.61
Solyc02g079830.1.1	Tomato	mitochondrion	25.24	26.25
Solyc02g079820.2.1	Tomato	cytosol, plastid	19.47	25.88
Solyc05g012250.1.1	Tomato	mitochondrion	27.88	22.52

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0080156	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4B6H9	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF506
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc02g062910.1	EnsemblPlants:Solyc02g062910.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002768465	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:34847856..34849106

Molecular Weight (calculated)

46426.7 Da

IEP (calculated)

8.638

GRAVY (calculated)

-0.391

Length

416 amino acids

Sequence
(BLAST)

001: MSSSISLRLA RHLSTSADAA ATTATAAASS IAGATISISK AKSKLKSEHD PDKALKIYSS VSNHYTSPLS SRYAQEYTVK RLAKSHRFSD IEAFLESHKD
101: DKKITQEPFL SSIIRSYGLA GMFDQALKTY LQMDDLGTPR SAVSFNVLLS ACVNSKFYDR VPQLFDEMPK KHGFLPDKVS YGVLIRSYCE MGKPELAMEK
201: LKEMEEKGVE ITAVTFTTIL NSLYKGGRCD EAEKVWNEMA KRGCGPDVGA YNVKIMNFQG GDPEGVKVLI EEMSNVGLKP DTISYNYLMS CYCRNGMMDE
301: AEKVYEDLET KGCNPNASTF RTLIFYLCKN EQFETGYKVF RESVRANKIP DVNTLKYLVH GLAKSSKAKE AKEMIRTMKK KFPANVVKVW TKIEEELGLA
401: KVELGDIKSN ESNVAQ

Best Arabidopsis Sequence Match ( AT4G36680.1 )
(BLAST)

001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M065]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.