Factsheet for HORVU6Hr1G059290.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G214000.1	Wheat	mitochondrion	90.64	94.37
TraesCS6A01G221200.1	Wheat	mitochondrion	90.44	94.16
TraesCS6B01G260000.1	Wheat	mitochondrion	89.81	93.51
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	75.05	93.28
Os02t0633200-01	Rice	mitochondrion	66.53	70.33
Zm00001d017317_P001	Maize	mitochondrion	65.7	67.09
EES05467	Sorghum	mitochondrion	64.03	65.81
GSMUA_Achr1P01950_001	Banana	mitochondrion	34.72	43.26
PGSC0003DMT400090439	Potato	plastid	32.02	37.93
VIT_04s0023g01460.t01	Wine grape	mitochondrion	32.64	37.92
CDY35471	Canola	mitochondrion	31.18	36.85
AT2G18520.1	Thale cress	mitochondrion	32.02	36.84
Bra037216.1-P	Field mustard	mitochondrion	32.02	36.75
Bra010568.1-P	Field mustard	mitochondrion	30.98	36.61
Solyc02g062910.1.1	Tomato	plastid	31.6	36.54
CDY67618	Canola	mitochondrion	31.81	36.52
CDY66741	Canola	mitochondrion	31.81	36.52
AT4G36680.1	Thale cress	mitochondrion	31.18	36.41
CDY24774	Canola	mitochondrion	30.77	36.36
PGSC0003DMT400039992	Potato	cytosol	29.94	35.04
Solyc02g085550.1.1	Tomato	plastid	16.01	31.43
HORVU3Hr1G077780.1	Barley	mitochondrion	23.49	28.97
HORVU3Hr1G077400.1	Barley	cytosol	22.45	28.2
HORVU6Hr1G094400.1	Barley	plastid	23.91	26.5
Solyc02g085650.2.1	Tomato	plastid	34.3	25.54
HORVU1Hr1G042520.2	Barley	mitochondrion	23.7	25.33
HORVU3Hr1G077440.2	Barley	mitochondrion	24.53	24.03
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	22.04	23.61
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	11.43	23.61
HORVU6Hr1G019320.1	Barley	plastid	20.79	21.55
HORVU3Hr1G070290.2	Barley	mitochondrion	17.67	21.46
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	17.05	20.97
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	17.05	20.97
HORVU3Hr1G101970.1	Barley	cytosol	7.9	20.77
HORVU5Hr1G041750.1	Barley	cytosol	15.18	20.56

Protein Annotations

EnsemblPlants:HORVU6Hr1G059290.1	EnsemblPlantsGene:HORVU6Hr1G059290	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1042
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000B46DA2B
UniProt:A0A287UC20	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:391870366..391873241

Molecular Weight (calculated)

52466.8 Da

IEP (calculated)

6.564

GRAVY (calculated)

-0.340

Length

481 amino acids

Sequence
(BLAST)

001: CVLCRPKPKT PDLCCDPIPP PKMAALASLL RRRRPDVLLR TLCATTTAPP LTSSAAKTRL RREYDADRAV SLLEAIDTAS LSAGSTRHAL SLAARRLTRA
101: GRLADAEALL SSHIPASPTE PHLSAILCSY ASAGLPEKAL EAFRSAVPSL PSPISSMPFN ALLSAFVRCR RHRRVPVLFE ELSKEFSITP NATSYAILVK
201: AHCMVRHDAK AHEVIARMRE EGISPTTTIY TTMIDSMYKQ KKIEEAQTLW KQMLESGCKP DHATYNVKAM HHGLSGKPEG VLEVMAEMEA DGVKPDTITY
301: NFLMTGYCKV GKMEDAKALY HSLGDKGCSA NAATYKHMLA ELFAHGDFDA ALEVFRESMS KHKVPDFKTM KGFVEGLAKG GKVAEAKEII YVVKKKFPDN
401: MLSGWKKLEK ELGFGSDNGD TTLHAECTAE EPVSEAEPAT TEPLELKDSA AEETGVSEES DDDETPSPET STDEEVPRGP A

Best Arabidopsis Sequence Match ( AT4G36680.1 )
(BLAST)

001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M065]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.