Factsheet for Bra037216.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67618	Canola	mitochondrion	99.28	99.28
AT2G18520.1	Thale cress	mitochondrion	82.82	83.01
Bra010568.1-P	Field mustard	mitochondrion	63.48	65.36
PGSC0003DMT400090439	Potato	plastid	53.94	55.66
VIT_04s0023g01460.t01	Wine grape	mitochondrion	53.94	54.59
Solyc02g062910.1.1	Tomato	plastid	52.51	52.88
PGSC0003DMT400039992	Potato	cytosol	51.55	52.55
Solyc02g085550.1.1	Tomato	plastid	28.88	49.39
GSMUA_Achr1P01950_001	Banana	mitochondrion	42.0	45.6
Solyc02g085650.2.1	Tomato	plastid	54.18	35.14
Zm00001d017317_P001	Maize	mitochondrion	39.38	35.03
Os02t0633200-01	Rice	mitochondrion	37.95	34.95
EES05467	Sorghum	mitochondrion	37.47	33.55
TraesCS6A01G221200.1	Wheat	mitochondrion	36.75	33.33
TraesCS6D01G214000.1	Wheat	mitochondrion	36.75	33.33
TraesCS6B01G260000.1	Wheat	mitochondrion	36.04	32.68
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	29.59	32.04
HORVU6Hr1G059290.1	Barley	cytosol	36.75	32.02
Bra008492.1-P	Field mustard	mitochondrion	28.16	30.1
Bra003553.1-P	Field mustard	mitochondrion	27.68	29.67
Bra037096.1-P	Field mustard	mitochondrion	27.92	29.47
Bra039373.1-P	Field mustard	cytosol	18.14	27.74
Bra019842.1-P	Field mustard	cytosol	18.38	27.6
Bra028380.1-P	Field mustard	mitochondrion	26.49	27.21
Bra001492.1-P	Field mustard	mitochondrion	25.78	27.0
Bra039372.1-P	Field mustard	cytosol, plastid	23.87	20.92

Protein Annotations

EnsemblPlants:Bra037216.1	EnsemblPlants:Bra037216.1-P	EnsemblPlantsGene:Bra037216	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat
InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF506	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002541EDF	UniProt:M4F805	MapMan:35.1	:

Description

AT2G18520 (E=2e-189) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:-:4969594..4970853

Molecular Weight (calculated)

47105.7 Da

IEP (calculated)

8.580

GRAVY (calculated)

-0.351

Length

419 amino acids

Sequence
(BLAST)

001: MTPSRLYLHF LRRFSTAVTD SPTTASPAAI TVSKAKSKLR KVHDPDKALA IYNSVSSNPS SPLSSRYAME LTVRRLARSH RFSDVEALIE SRKKDPQIKT
101: ESFLSTLIRS YGRASMFDHA LRTFEEMEQL GTPRSVVSFN ALLAACLHSD LFERVPQLFD EMPQRYRNIT PDKVSYGMLI KSYCDAGSVD KAMETMRVME
201: EKGVEVNIIS FTTILGSLYK NGETDVAESL WSEMVSKGCE LDNTVYNVRL MNAAKESPER VKELMEEMCS VGLKPDTISY NYLMTAYCVK GMMGEAKKVY
301: EGLDEKEGCC ANAATFRTLI FHLCINGLYD QGLVVFKKSA LVHKIPDFKT CKHLTEGLVR NNRMEDARGV ARIVKKKYPP RLVTEWKKLE ESLGLYTKAS
401: AAGSSRTREV SDQESDADA

Best Arabidopsis Sequence Match ( AT2G18520.1 )
(BLAST)

001: MTSSRLYLRF LRRFSTATGI DSQTTAYPGA ITMSKAKSKL RKVQDPDKAL AIYKSVSNNS TSPLSSRYAM ELTVQRLAKS QRFSDIEALI ESHKNNPKIK
101: TETFLSTLIR SYGRASMFDH AMKMFEEMDK LGTPRTVVSF NALLAACLHS DLFERVPQLF DEFPQRYNNI TPDKISYGML IKSYCDSGKP EKAMEIMRDM
201: EVKGVEVTII AFTTILGSLY KNGLVDEAES LWIEMVNKGC DLDNTVYNVR LMNAAKESPE RVKELMEEMS SVGLKPDTVS YNYLMTAYCV KGMMSEAKKV
301: YEGLEQPNAA TFRTLIFHLC INGLYDQGLT VFKKSAIVHK IPDFKTCKHL TEGLVKNNRM EDARGVARIV KKKFPPRLVT EWKKLEEKLG LYSKGNAAAV
401: SSSSQTREVL DQEREDDV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18520, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU67]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.