Factsheet for Bra001492.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82550	Canola	mitochondrion	95.75	97.46
Bra039373.1-P	Field mustard	cytosol	61.75	90.15
AT3G13160.1	Thale cress	mitochondrion	78.25	79.44
Bra037096.1-P	Field mustard	mitochondrion	63.75	64.23
VIT_00s0271g00080.t01	Wine grape	mitochondrion	47.0	51.79
VIT_00s0274g00040.t01	Wine grape	mitochondrion	48.75	51.05
Solyc03g031460.1.1	Tomato	plastid	46.25	48.81
PGSC0003DMT400012953	Potato	cytosol	46.25	48.81
KRH41973	Soybean	nucleus	43.5	45.67
KRH49916	Soybean	cytosol	43.25	43.25
HORVU3Hr1G077400.1	Barley	cytosol	30.5	31.85
GSMUA_Achr10P...	Banana	mitochondrion	31.75	31.67
Bra039372.1-P	Field mustard	cytosol, plastid	36.5	30.54
Zm00001d012606_P001	Maize	mitochondrion	32.25	28.48
EES01580	Sorghum	mitochondrion	31.25	28.47
EES01579	Sorghum	mitochondrion	30.5	28.44
TraesCS3A01G324300.1	Wheat	plastid	30.5	28.24
Os01t0785700-01	Rice	mitochondrion	30.5	28.11
Bra008492.1-P	Field mustard	mitochondrion	27.25	27.81
TraesCS3B01G361800.1	Wheat	plastid	30.0	27.33
Bra010568.1-P	Field mustard	mitochondrion	27.75	27.27
Bra003553.1-P	Field mustard	mitochondrion	26.5	27.11
TraesCS3A01G324200.1	Wheat	plastid	30.25	26.59
TraesCS3B01G353300.1	Wheat	plastid	27.75	26.55
Bra028380.1-P	Field mustard	mitochondrion	27.0	26.47
TraesCS3A01G324500.1	Wheat	plastid	31.25	26.43
TraesCS3A01G331700.1	Wheat	plastid	28.0	26.23
Bra019842.1-P	Field mustard	cytosol	18.25	26.16
TraesCS3D01G317700.1	Wheat	plastid	30.5	25.85
TraesCS3D01G325200.1	Wheat	plastid	29.0	25.84
Bra037216.1-P	Field mustard	mitochondrion	27.0	25.78
TraesCS3A01G331600.1	Wheat	plastid	29.5	25.71
HORVU3Hr1G077440.2	Barley	mitochondrion	31.0	25.25
HORVU6Hr1G019320.1	Barley	plastid	28.5	24.57
TraesCS3D01G317800.1	Wheat	plastid	30.75	24.45
TraesCS3B01G353500.1	Wheat	plastid	30.5	24.25
EER95222	Sorghum	mitochondrion	29.5	23.94

Protein Annotations

EnsemblPlants:Bra001492.1	EnsemblPlants:Bra001492.1-P	EnsemblPlantsGene:Bra001492	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1622	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0002540875	UniProt:M4CBB2	MapMan:35.1	:	:	:

Description

AT3G13160 (E=8e-175) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA03:-:16663947..16665149

Molecular Weight (calculated)

45491.7 Da

IEP (calculated)

5.913

GRAVY (calculated)

-0.364

Length

400 amino acids

Sequence
(BLAST)

001: MSFLSRLLLR GTNSFNTTTT TTTTTTTTTN IRFFSAVAAT SQRTPSLITL VNDETDPKHI TEKFKKACET EWFRKNKPVY ERTVRRLAAA KKFEWIEEIL
101: EEQNKYPNMS KEGFVARIIN LYGRAGMFEN AQKVFDEMPQ RNCKRTVLSF NALLNACVNS KKFDLVEGMF NELPGKLSIE PDIASYNTLI KGLCGKGSLS
201: EAVALIDEIE NKGLKPDHFS YNLLLHESYT KGHFEQGEEI WSRMVEKDVA RDIRSYNARL LGLALEVKSE EMVGLFEELK GNGIKPDVFT FTALVRGCAG
301: EGKVDEAKMW YKELEKNGFR PMKLIFSSLL PAMCKAGDLE SAFELCKEIF SKRLLVDGDI MQEVVDELVK GSKREEAEEI VELAKKNEYL QFKLCLSSEE

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.