Factsheet for Bra008492.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37572	Canola	mitochondrion	98.98	97.49
Bra003553.1-P	Field mustard	mitochondrion	85.97	86.19
AT1G80150.1	Thale cress	mitochondrion	82.4	81.36
VIT_09s0002g06540.t01	Wine grape	mitochondrion	64.03	59.48
PGSC0003DMT400072924	Potato	mitochondrion	56.63	54.81
Zm00001d006609_P001	Maize	cytosol	42.6	53.53
Zm00001d014711_P001	Maize	cytosol	33.67	46.48
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	51.28	44.87
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	50.77	44.72
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	50.51	44.49
Os08t0499800-01	Rice	mitochondrion	50.26	44.47
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	50.51	44.1
Zm00001d031321_P001	Maize	mitochondrion	51.28	43.79
Solyc05g012250.1.1	Tomato	mitochondrion	56.38	42.91
EES15434	Sorghum	plastid	50.51	42.58
HORVU3Hr1G070290.2	Barley	mitochondrion	40.56	40.15
Bra037096.1-P	Field mustard	mitochondrion	28.57	28.21
Bra037216.1-P	Field mustard	mitochondrion	30.1	28.16
Bra019842.1-P	Field mustard	cytosol	19.64	27.6
Bra039373.1-P	Field mustard	cytosol	19.13	27.37
Bra010568.1-P	Field mustard	mitochondrion	28.32	27.27
Bra001492.1-P	Field mustard	mitochondrion	27.81	27.25
Bra028380.1-P	Field mustard	mitochondrion	28.06	26.96
Bra039372.1-P	Field mustard	cytosol, plastid	26.79	21.97

Protein Annotations

EnsemblPlants:Bra008492.1	EnsemblPlants:Bra008492.1-P	EnsemblPlantsGene:Bra008492	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1623	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0002546C55	UniProt:M4CW95	MapMan:35.1	:	:	:

Description

AT1G80150 (E=8e-173) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA02:-:15953083..15954261

Molecular Weight (calculated)

44703.2 Da

IEP (calculated)

10.063

GRAVY (calculated)

-0.097

Length

392 amino acids

Sequence
(BLAST)

001: MLSLRPIRRF YPSLATGVFA STLHVPAESN QEEAPALVKL KSERDPEKLF NLFKANATNH LVIENRFAFQ DTVSRLAGAR RFDFIEDLLE HQKTLPQGRR
101: EGFIVRIIML YGKAGMTKHA LDTFFSMDSY GCKRSVKSFN AALRVLTLKP DLHTIQDFLL HAPSKYGVVM DAFSFNIAIK SVCDMGFLDK ASLVMKEMEK
201: SGLKPDVVTY TTLISAFYKH DRYVIGNGLW NHMVLKGCKP NLTTFNVRIQ FLVNRGRAWD ANDLLMLMPK LQMEPDNVTY NMVIKGFFVA GFPEMAERVY
301: TAMHGKGYKP NVKIYQTMIH YLCKAGKFDL GYTMCKDCMR KKWYPNLDTV GVLVDGLVKK GQLDQAKLIM ELVHKRVPPF SSKQLIPLKS IL

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.