Factsheet for Zm00001d006609_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014711_P001	Maize	cytosol	76.28	83.8
Zm00001d031321_P001	Maize	mitochondrion	96.47	65.58
EES15434	Sorghum	plastid	91.03	61.08
Os08t0499800-01	Rice	mitochondrion	84.62	59.59
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	80.45	56.4
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	80.45	56.4
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	80.45	56.03
HORVU3Hr1G070290.2	Barley	mitochondrion	70.83	55.81
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	80.13	55.68
Bra008492.1-P	Field mustard	mitochondrion	53.53	42.6
CDY54310	Canola	mitochondrion	52.88	42.2
CDY38649	Canola	mitochondrion	52.24	42.01
CDY37572	Canola	mitochondrion	53.53	41.96
CDY57688	Canola	mitochondrion	52.24	41.69
AT1G80150.1	Thale cress	mitochondrion	52.88	41.56
Bra003553.1-P	Field mustard	mitochondrion	51.92	41.43
VIT_09s0002g06540.t01	Wine grape	mitochondrion	54.49	40.28
PGSC0003DMT400072924	Potato	mitochondrion	50.32	38.77
Solyc05g012250.1.1	Tomato	mitochondrion	50.0	30.29
Zm00001d043225_P001	Maize	mitochondrion	27.56	21.88
Zm00001d018534_P001	Maize	mitochondrion	26.92	20.05
Zm00001d012606_P001	Maize	mitochondrion	25.96	17.88
Zm00001d017317_P001	Maize	mitochondrion	25.32	16.77
Zm00001d032661_P001	Maize	mitochondrion	23.08	16.44
Zm00001d013990_P001	Maize	mitochondrion, plastid	12.82	15.75

Protein Annotations

EnsemblPlants:Zm00001d006609_P001	EnsemblPlants:Zm00001d006609_T001	EnsemblPlantsGene:Zm00001d006609	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1623	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:ONM24542.1
TIGRFAMs:TIGR00756	UniParc:UPI000843DE58	UniProt:A0A1D6EZ35	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr2:+:212548604..212549648

Molecular Weight (calculated)

35795.2 Da

IEP (calculated)

10.356

GRAVY (calculated)

-0.345

Length

312 amino acids

Sequence
(BLAST)

001: MFRANAHNRL LVENRFAFKD AVARVAGARQ NDLVEEILEQ HKALPQGRRE GFVVRIIGLY EKAGMPGHAL RTFQEMGMYG CPRTAKSLNA TMKMFCDMGD
101: LRAAYRVMQG MERAGVRPDV ITYTTLMAAF YKCGRREVGD GLWNLMRLRG CVPTLATYNV RIQFLVNRGR GWQANEMARK MYVAGIKPDE ITYNLIIKGF
201: FMMGEHEMAK TVFGAMHGRG CKPNNKVYQT MVHYICERRD FDLAFRLCKD IMEKNWFPSV DTINQLLKGL MAISKDRNGK EIMKLVTGRK PSYSDGEMKV
301: FKDILSHRKT GR

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.