CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003553.1-P	Field mustard	mitochondrion	98.21	98.21
CDY54310	Canola	mitochondrion	93.61	93.61
CDY38649	Canola	mitochondrion	87.47	88.14
CDY37572	Canola	mitochondrion	86.44	84.92
AT1G80150.1	Thale cress	mitochondrion	78.01	76.83
VIT_09s0002g06540.t01	Wine grape	mitochondrion	63.17	58.53
PGSC0003DMT400072924	Potato	mitochondrion	57.03	55.06
Zm00001d006609_P001	Maize	cytosol	41.69	52.24
Zm00001d014711_P001	Maize	cytosol	32.74	45.07
Os08t0499800-01	Rice	mitochondrion	50.38	44.47
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	50.64	44.2
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	50.13	44.04
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	49.87	43.82
Zm00001d031321_P001	Maize	mitochondrion	50.9	43.36
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	49.62	43.21
Solyc05g012250.1.1	Tomato	mitochondrion	56.78	43.11
EES15434	Sorghum	plastid	50.64	42.58
HORVU3Hr1G070290.2	Barley	mitochondrion	40.41	39.9
CDY07260	Canola	cytosol	11.76	30.07
CDX97972	Canola	cytosol	20.97	29.39
CDY66550	Canola	mitochondrion	21.74	28.43
CDY67618	Canola	mitochondrion	30.18	28.16
CDY49792	Canola	plastid	28.9	27.7
CDY24774	Canola	mitochondrion	28.64	27.52
CDY47165	Canola	mitochondrion	28.64	27.45
CDY66741	Canola	mitochondrion	29.41	27.45
CDY24208	Canola	mitochondrion	27.62	27.41
CDY35471	Canola	mitochondrion	28.39	27.27
CDY25328	Canola	mitochondrion, plastid	28.39	27.21
CDY43367	Canola	mitochondrion	27.11	26.9
CDY26081	Canola	mitochondrion	27.11	26.77
CDY08267	Canola	mitochondrion	27.11	26.7
CDX82550	Canola	mitochondrion	26.6	26.46
CDY43368	Canola	plastid	26.85	23.92
CDY24210	Canola	plastid	26.6	23.74

Protein Annotations

EnsemblPlants:CDY57688	EnsemblPlantsGene:GSBRNA2T00022536001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1623
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY57688	ProteinID:CDY57688.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EEE028	UniProt:A0A078J2K8	MapMan:35.1	:	:

Description

BnaA07g38290DBnaA07g38290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2K8]

Coordinates

chrLK033596:+:17677..18852

Molecular Weight (calculated)

44432.0 Da

IEP (calculated)

10.190

GRAVY (calculated)

-0.051

Length

391 amino acids

Sequence
(BLAST)

001: MLSLPPVRRF FFRSCSSIAT AVATIPAESN QKELTPALVK LKSERDPEKL FNLFKSNATN SLVIENRFAF QDTVSRLAGA RRFDYIEALL EHQKALPQGR
101: REGFVVRIIM LYGKAGMTKH ALDTFYNMDS SKRTVKSFNA ALKVLTLKPD LHTIQDFIGH VPFKYGVVMD VVSFNIAIKS LCEMGFLDKA SLAMKEMEKF
201: GLKPDVVTYT TLISAFYKQD RYVIGNGLWN HMVVKGCRPN LTTFNVRIQF LVNRGRAWDA NDLLMLMPKF QMEPDSVTYN MVIKGFFVAG FPEMAERVYT
301: AMHGKGCKPN VKIYQTMIHY LCKAGKFDLG YTMCKDCMRK KWYPNLDTVG VLLDGLVKKG QLDQAKLIMG LVRKRVPPFS SKQLLSLESV L

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.