Factsheet for Zm00001d031321_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014711_P001	Maize	cytosol	59.7	96.48
Zm00001d006609_P001	Maize	cytosol	65.58	96.47
EES15434	Sorghum	plastid	91.5	90.32
Os08t0499800-01	Rice	mitochondrion	78.87	81.72
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	75.16	77.53
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	75.16	77.53
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	75.38	77.23
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	74.51	76.17
HORVU3Hr1G070290.2	Barley	mitochondrion	55.77	64.65
CDY54310	Canola	mitochondrion	44.01	51.66
CDY38649	Canola	mitochondrion	43.36	51.29
Bra008492.1-P	Field mustard	mitochondrion	43.79	51.28
CDY37572	Canola	mitochondrion	44.23	51.01
CDY57688	Canola	mitochondrion	43.36	50.9
AT1G80150.1	Thale cress	mitochondrion	44.01	50.88
Bra003553.1-P	Field mustard	mitochondrion	43.14	50.64
VIT_09s0002g06540.t01	Wine grape	mitochondrion	45.75	49.76
PGSC0003DMT400072924	Potato	mitochondrion	42.05	47.65
Solyc05g012250.1.1	Tomato	mitochondrion	41.61	37.09
Zm00001d043225_P001	Maize	mitochondrion	22.22	25.95
Zm00001d018534_P001	Maize	mitochondrion	22.44	24.58
Zm00001d012606_P001	Maize	mitochondrion	23.31	23.62
Zm00001d013990_P001	Maize	mitochondrion, plastid	12.85	23.23
Zm00001d032661_P001	Maize	mitochondrion	21.35	22.37
Zm00001d017317_P001	Maize	mitochondrion	22.0	21.44

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100383318	MapMan:35.1	EMBL:BT066897	UniProt:C0PF28	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM02696.1	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000195CAB6	EnsemblPlantsGene:Zm00001d031321	EnsemblPlants:Zm00001d031321_P001	EnsemblPlants:Zm00001d031321_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr1:+:185960624..185962003

Molecular Weight (calculated)

51488.7 Da

IEP (calculated)

10.056

GRAVY (calculated)

-0.313

Length

459 amino acids

Sequence
(BLAST)

001: MLSLGALRKL CAAFDAVALT VIAAGLSRPP SGRHPFSSAH AHSSHPADFP TIAACRAAIS ASKGDRRRRP GVGQPSSSPS PSLAAAAAKE EQEQPVLVRI
101: KHERDPERLY QLFRANAHNR LLVENRFAFE DAVARLAGAR RNDLVEEILE QHKALPQGRR EGFVVRIIGL YGKAGMPGHA LRTFQEMGMY GCPRTAKSLN
201: ATMKVLLRAR MFDEALSLFE EGPEKYDVEV DDISCNTVVK MFCDMGDLRA AYQVMQGMER AGVRPDVITY TTLMAAFYKC GRREVGDGLW NLMRLRGCVP
301: TLATYNVRIQ FLVNRGRGWQ ANELARKMYV AGIKPDEITY NLIIKGFFMM GEHEMAKTVF GAMHGRGCKP NSKVYQTMVH YLCERRDFDL AFRLCKDSME
401: KNWFPSVDTI NQLLKGLMAI SKDRNGKEIM KLVTGRKPSY SDGEMRVFKD ILSHRKTGR

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.