Factsheet for VIT_09s0002g06540.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G80150.1	Thale cress	mitochondrion	61.61	65.49
CDY38649	Canola	mitochondrion	59.24	64.43
Bra008492.1-P	Field mustard	mitochondrion	59.48	64.03
CDY57688	Canola	mitochondrion	58.53	63.17
Bra003553.1-P	Field mustard	mitochondrion	58.29	62.92
CDY54310	Canola	mitochondrion	58.29	62.92
CDY37572	Canola	mitochondrion	59.24	62.81
PGSC0003DMT400072924	Potato	mitochondrion	57.58	60.0
Zm00001d006609_P001	Maize	cytosol	40.28	54.49
Solyc05g012250.1.1	Tomato	mitochondrion	57.82	47.38
Os08t0499800-01	Rice	mitochondrion	49.05	46.73
Zm00001d014711_P001	Maize	cytosol	31.28	46.48
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	48.82	46.29
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	49.05	46.21
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	48.58	46.07
Zm00001d031321_P001	Maize	mitochondrion	49.76	45.75
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	48.58	45.66
EES15434	Sorghum	plastid	49.29	44.73
HORVU3Hr1G070290.2	Barley	mitochondrion	38.39	40.91
VIT_00s0271g00050.t01	Wine grape	mitochondrion	18.01	33.48
VIT_00s0271g00080.t01	Wine grape	mitochondrion	28.67	33.33
VIT_00s0271g00070.t01	Wine grape	mitochondrion	29.38	32.72
VIT_00s0274g00040.t01	Wine grape	mitochondrion	29.38	32.46
VIT_00s0271g00040.t01	Wine grape	cytosol	15.4	31.86
VIT_10s0116g00090.t01	Wine grape	mitochondrion	18.48	30.59
VIT_10s0116g00030.t01	Wine grape	plastid	28.2	30.05
VIT_04s0023g01460.t01	Wine grape	mitochondrion	28.2	28.74
VIT_01s0010g01460.t01	Wine grape	mitochondrion	24.88	27.2

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100252569	wikigene:100252569	MapMan:35.1	ProteinID:CCB59589	ProteinID:CCB59589.1
UniProt:F6HXB9	EMBL:FN596494	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100252569
wikigene:LOC100252569	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1623
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002109FCC	ArrayExpress:VIT_09s0002g06540	EnsemblPlantsGene:VIT_09s0002g06540
EnsemblPlants:VIT_09s0002g06540.t01	RefSeq:XP_002267057	RefSeq:XP_002267057.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr9:-:6470899..6476134

Molecular Weight (calculated)

48072.8 Da

IEP (calculated)

8.829

GRAVY (calculated)

-0.095

Length

422 amino acids

Sequence
(BLAST)

001: MLSLRPIRRF CHAAAITAIA PVAETVTSAK SNCIKKPDKP LEEPALVKLK AERDPERLFQ LFKANAHNRL VVENRFAFED TVSRLAGAGR FDYIEHLLEH
101: QKTLPQGRRE GFIVRIIMLY GKAGMIKQAV DTFYDMHLFG CQRTVKSFNA ALKVLTQSYD LEAIDLFLRD VPFKFGIELD VFSVNIVIKA LCDMDILEKA
201: YMVMIEMEKA GVNPDVVTYT TLISAFYKSN RWEVGNGLWN LMVMKGCLPN LATFNVRIQY LVNRRRAWQA NSLMGMMEYL GITPDEVTYN LVIKGFCQAG
301: YLEMAKKVYS ALHGKGYKPN VKIYQTMIHY LCKGGEFDMA YTMCKDCMNR NWSLNVDTIY KLLEGLKGNG EIDKAKSSQS PKFFFGGKEQ KDQWKESNFS
401: SLDIPNAILI LIVGSFYTEL GE

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.