Factsheet for Solyc05g012250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072924	Potato	mitochondrion	75.34	95.8
VIT_09s0002g06540.t01	Wine grape	mitochondrion	47.38	57.82
CDY38649	Canola	mitochondrion	43.5	57.73
AT1G80150.1	Thale cress	mitochondrion	43.88	56.93
Bra003553.1-P	Field mustard	mitochondrion	43.11	56.78
CDY57688	Canola	mitochondrion	43.11	56.78
Bra008492.1-P	Field mustard	mitochondrion	42.91	56.38
CDY54310	Canola	mitochondrion	42.14	55.5
CDY37572	Canola	mitochondrion	42.72	55.28
Zm00001d006609_P001	Maize	cytosol	30.29	50.0
Zm00001d014711_P001	Maize	cytosol	24.66	44.72
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	37.28	42.86
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	36.5	42.25
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	36.5	42.25
Os08t0499800-01	Rice	mitochondrion	36.31	42.21
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	36.7	42.09
Zm00001d031321_P001	Maize	mitochondrion	37.09	41.61
EES15434	Sorghum	plastid	36.5	40.43
HORVU3Hr1G070290.2	Barley	mitochondrion	30.87	40.15
Solyc03g031460.1.1	Tomato	plastid	21.16	28.76
Solyc02g085550.1.1	Tomato	plastid	13.59	28.57
Solyc02g062910.1.1	Tomato	plastid	22.52	27.88
Solyc02g079830.1.1	Tomato	mitochondrion	20.39	26.25
Solyc10g005280.1.1	Tomato	mitochondrion	20.0	25.62
Solyc02g079820.2.1	Tomato	cytosol, plastid	15.15	24.92
Solyc02g085650.2.1	Tomato	plastid	23.11	18.42

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4BXU8
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1623
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc05g012250.1	EnsemblPlants:Solyc05g012250.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002765689
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:5539986..5545737

Molecular Weight (calculated)

59742.5 Da

IEP (calculated)

10.092

GRAVY (calculated)

-0.093

Length

515 amino acids

Sequence
(BLAST)

001: MLTLRLVRRF GTRSRLAAVS CAGNTSKKAL VSKRKRVKVD EPALFRLKKE KNPEKLFQLF KENAHNKIVI ENRYAFEDTV SRLAGAGRFD YIENLLEHQK
101: TLPQGRREGF IIRIIMLYGK AGMIQNAIKT FYDMHLYGCP RTVKSFNAAL KVLTQSHDMK AIESFLWDVP ERFSINIDIL SVNTIISSFC SMGILEKAYL
201: FMVEMEKLGI SPDVFTYTIL ISAFYKVNRW QIADGLWNLM VRKGCMPNVA TFNVRIQFMV NMRFAWEANK LLQLMKRIGI TPDEVTYNLV IKGFFLVENL
301: PMAKRIYSAF HGAGFKPNSR IYQTMIHYLC RAGDFDLSYS MCKESMENNW FPSSDIIKNI LEGLCKDGTE EKMRNARFLV ILAKKKIPPF STETLDAINK
401: ILLFREVQWG LKDVWKYNGN LICMDNIPVF HLPHQSIYFH DGIILLLSLS WLLKGSSVEQ KRRATLKSFQ LYNYHVHNYE RTSHYQDINI VRSTLKAITT
501: DTCLLLAELK LQSRI

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.