Factsheet for TraesCS7D01G240000.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G136500.1	Wheat	endoplasmic reticulum, plastid	98.2	98.2
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	97.98	97.32
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	95.06	94.21
Os08t0499800-01	Rice	mitochondrion	81.12	81.49
Zm00001d006609_P001	Maize	cytosol	56.4	80.45
HORVU3Hr1G070290.2	Barley	mitochondrion	70.56	79.29
Zm00001d014711_P001	Maize	cytosol	48.54	76.06
Zm00001d031321_P001	Maize	mitochondrion	77.53	75.16
EES15434	Sorghum	plastid	77.98	74.62
CDY54310	Canola	mitochondrion	45.62	51.92
CDY38649	Canola	mitochondrion	44.27	50.77
Bra008492.1-P	Field mustard	mitochondrion	44.72	50.77
CDY37572	Canola	mitochondrion	45.17	50.5
AT1G80150.1	Thale cress	mitochondrion	44.94	50.38
CDY57688	Canola	mitochondrion	44.04	50.13
Bra003553.1-P	Field mustard	mitochondrion	43.6	49.62
VIT_09s0002g06540.t01	Wine grape	mitochondrion	46.29	48.82
PGSC0003DMT400072924	Potato	mitochondrion	42.25	46.42
Solyc05g012250.1.1	Tomato	mitochondrion	42.25	36.5
TraesCS6D01G401100.1	Wheat	mitochondrion	23.37	24.59
TraesCS3D01G319900.1	Wheat	mitochondrion	17.75	23.37
TraesCS6D01G214000.1	Wheat	mitochondrion	22.92	22.08
TraesCS3D01G325200.1	Wheat	plastid	21.35	21.16
TraesCS3D01G317700.1	Wheat	plastid	21.57	20.34
TraesCS3D01G317800.1	Wheat	plastid	22.47	19.88

Protein Annotations

EnsemblPlants:TraesCS7D01G240000.1	EnsemblPlantsGene:TraesCS7D01G240000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1623
PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr7D:+:204445682..204447019

Molecular Weight (calculated)

50531.6 Da

IEP (calculated)

9.980

GRAVY (calculated)

-0.304

Length

445 amino acids

Sequence
(BLAST)

001: MLSLGALRKL CAAFDAVALT IIAAGLSHPR CRPFSARAAP PPDFPTIASC RAAVAASKRR RQPSSAPAEA RPEGPADAEA PVLVRIKRER DPVRLYELFK
101: ANADNRVLVE NRFAFEDAVA RLAGARRNDL VEEILEQHKA LPQGRREGFV VRIIGLYGRA RMPEHALRTF RETEMYGCER TVKSLNATMK VLMQARLFDE
201: ALRLLDEASP TYGVELDDIS YNTVVKMACD MGELHAAYRV MQEMEKEGVR PDVITYTTLM AAFYKNGHRE VGDGLWNLMR LRGCMPTLTS YNVRIQFLIN
301: RRRGWQANDL VRKMYAAGIT PDQITYNLVI KGFFVIGEHE MAKTVFGAMH GRGCKPNERI YQTMVHYLCK RREFNLAFRL CKDSMEKNWF PSVDTIHNLL
401: KGLMVIKKDR NAREIMKLVA ERKPSYSVDD VKAFQDILSH GKTGR

Best Arabidopsis Sequence Match ( AT1G80150.1 )
(BLAST)

001: MLSLRHIRRF CHFPSSAATG IAYVSTESNQ IQGLKPLEEP ALVKLKSERD PEKLYNLFKA NATNRLVIEN RFAFEDTVSR LAGAGRLDFI EDLLEHQKTL
101: PQGRREGFIV RIIMLYGKAG MTKQALDTFF NMDLYGCKRS VKSFNAALQV LSFNPDLHTI WEFLHDAPSK YGIDIDAVSF NIAIKSFCEL GILDGAYMAM
201: REMEKSGLTP DVVTYTTLIS ALYKHERCVI GNGLWNLMVL KGCKPNLTTF NVRIQFLVNR RRAWDANDLL LLMPKLQVEP DSITYNMVIK GFFLARFPDM
301: AERVYTAMHG KGYKPNLKIY QTMIHYLCKA GNFDLAYTMC KDCMRKKWYP NLDTVEMLLK GLVKKGQLDQ AKSIMELVHR RVPPFRSKQL LSLKSIL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g80150, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8GW57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.