Factsheet for TraesCS3D01G325200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G327000.1
TraesCS2B01G355000.6
TraesCS2D01G335900.1
TraesCS6A01G208300.2
TraesCS6A01G274500.1
TraesCS6B01G236800.1
TraesCS6B01G302000.1
TraesCS6D01G191900.3
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS2A01G327000.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS2B01G355000.6	AT4G24690.1	21798944
AT1G55890.1	TraesCS2D01G335900.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6A01G208300.2	AT4G24690.1	21798944
AT1G55890.1	TraesCS6B01G236800.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6D01G191900.3	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G331600.1	Wheat	plastid	87.53	85.62
TraesCS3B01G361800.1	Wheat	plastid	82.85	84.74
HORVU6Hr1G019320.1	Barley	plastid	74.16	71.77
TraesCS3D01G317700.1	Wheat	plastid	74.16	70.55
TraesCS3D01G317800.1	Wheat	plastid	72.16	64.41
Os01t0785700-01	Rice	mitochondrion	54.12	55.99
EES01580	Sorghum	mitochondrion	52.12	53.3
Zm00001d012606_P001	Maize	mitochondrion	53.45	52.98
EES01579	Sorghum	mitochondrion	49.44	51.75
EER95222	Sorghum	mitochondrion	52.56	47.87
GSMUA_Achr10P...	Banana	mitochondrion	40.98	45.89
VIT_00s0274g00040.t01	Wine grape	mitochondrion	31.18	36.65
VIT_00s0271g00040.t01	Wine grape	cytosol	16.26	35.78
VIT_00s0271g00080.t01	Wine grape	mitochondrion	28.73	35.54
Solyc03g031460.1.1	Tomato	plastid	28.95	34.3
PGSC0003DMT400012953	Potato	cytosol	28.73	34.04
VIT_00s0271g00070.t01	Wine grape	mitochondrion	28.73	34.04
VIT_00s0271g00050.t01	Wine grape	mitochondrion	17.15	33.92
KRH41973	Soybean	nucleus	28.73	33.86
CDY08267	Canola	mitochondrion	29.18	33.0
Bra037096.1-P	Field mustard	mitochondrion	29.18	33.0
PGSC0003DMT400055888	Potato	mitochondrion	27.62	32.89
CDY26081	Canola	mitochondrion	28.73	32.58
Bra039373.1-P	Field mustard	cytosol	19.82	32.48
KRH49916	Soybean	cytosol	28.73	32.25
AT1G55890.1	Thale cress	mitochondrion	27.84	31.41
PGSC0003DMT400055889	Potato	plastid	26.95	30.79
Solyc02g079830.1.1	Tomato	mitochondrion	27.39	30.75
CDY43367	Canola	mitochondrion	26.95	30.71
AT3G13160.1	Thale cress	mitochondrion	26.95	30.71
CDY24208	Canola	mitochondrion	26.73	30.46
CDY66550	Canola	mitochondrion	20.27	30.43
CDX82550	Canola	mitochondrion	26.06	29.77
PGSC0003DMT400071165	Potato	extracellular	11.58	29.55
Solyc02g079820.2.1	Tomato	cytosol, plastid	20.27	29.07
Bra001492.1-P	Field mustard	mitochondrion	25.84	29.0
TraesCS3D01G319900.1	Wheat	mitochondrion	19.38	25.74
CDY24210	Canola	plastid	24.5	25.11
CDY43368	Canola	plastid	24.5	25.06
TraesCS6D01G401100.1	Wheat	mitochondrion	22.94	24.35
Bra039372.1-P	Field mustard	cytosol, plastid	24.5	23.01
TraesCS6D01G214000.1	Wheat	mitochondrion	23.39	22.73
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	21.16	21.35
AT3G13150.1	Thale cress	plastid	24.28	19.78

Protein Annotations

EnsemblPlants:TraesCS3D01G325200.1	EnsemblPlantsGene:TraesCS3D01G325200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622
PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr3D:+:438047038..438048387

Molecular Weight (calculated)

48779.2 Da

IEP (calculated)

8.666

GRAVY (calculated)

-0.289

Length

449 amino acids

Sequence
(BLAST)

001: MSSLAAAAAA AVAAASTWVK SLSRIIPSST PAVKPPKRNP KTTTDAGSIP DQKLPKPLGA HPAGEAESDA GHKLGKPLGG VLKALIRERD PDKLVSKFVE
101: ASSASSRFRD GRRAYDVAVS RLTSLGRKDG IEAIIEAQKP FLETSSEGFA TRLIRLYGSA SMPSHAAATF HLLPARHKST RTFNAVLAAY AEAGDVAALT
201: AAFQEIPAAH PSIVPDLYSY NALIRTLCQK SNLSAALYAV HLMKKHGVSP DIITFNSLLD GFHNSGRNDE AEKVWQMIKE RNLEPDAKCY NAKLRGLVAQ
301: GRIDDAASVL ERLEKDGPKP NIVSYNELIR GYCKAGRFQE AKKVYDNLMK NECVPNKGTY EILVPHLLQA GELDCALSYC YDIFASKKCC GVEWGVLQDV
401: VNALVDASRV VEATKLVELD WQKYYHRKGL RMPPSAGTDE EESISGEKE

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.