Factsheet for HORVU6Hr1G019320.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU2Hr1G082590.15
HORVU6Hr1G053250.1
HORVU6Hr1G069310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT1G55890.1	HORVU2Hr1G082590.15	AT4G24690.1	21798944
AT1G55890.1	HORVU6Hr1G053250.1	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G361800.1	Wheat	plastid	74.78	79.04
TraesCS3A01G331600.1	Wheat	plastid	74.57	75.38
TraesCS3D01G325200.1	Wheat	plastid	71.77	74.16
TraesCS3A01G331700.1	Wheat	plastid	67.46	73.3
HORVU3Hr1G077400.1	Barley	cytosol	57.97	70.23
HORVU3Hr1G077440.2	Barley	mitochondrion	70.47	66.6
Os01t0785700-01	Rice	mitochondrion	52.37	55.99
EES01580	Sorghum	mitochondrion	49.57	52.39
Zm00001d012606_P001	Maize	mitochondrion	51.08	52.32
EES01579	Sorghum	mitochondrion	46.55	50.35
EER95222	Sorghum	mitochondrion	50.43	47.46
GSMUA_Achr10P...	Banana	mitochondrion	37.93	43.89
VIT_00s0271g00080.t01	Wine grape	mitochondrion	28.23	36.09
VIT_00s0271g00050.t01	Wine grape	mitochondrion	17.46	35.68
VIT_00s0274g00040.t01	Wine grape	mitochondrion	29.31	35.6
VIT_00s0271g00040.t01	Wine grape	cytosol	15.52	35.29
VIT_00s0271g00070.t01	Wine grape	mitochondrion	28.45	34.83
Solyc03g031460.1.1	Tomato	plastid	27.37	33.51
PGSC0003DMT400012953	Potato	cytosol	27.37	33.51
PGSC0003DMT400055889	Potato	plastid	27.8	32.82
Solyc02g079830.1.1	Tomato	mitochondrion	28.02	32.5
KRH41973	Soybean	nucleus	26.29	32.02
Bra039373.1-P	Field mustard	cytosol	18.75	31.75
PGSC0003DMT400071165	Potato	extracellular	11.85	31.25
CDY08267	Canola	mitochondrion	26.72	31.23
Bra037096.1-P	Field mustard	mitochondrion	26.72	31.23
CDY26081	Canola	mitochondrion	26.51	31.06
PGSC0003DMT400055888	Potato	mitochondrion	25.22	31.03
AT1G55890.1	Thale cress	mitochondrion	26.51	30.9
KRH49916	Soybean	cytosol	26.29	30.5
CDY24208	Canola	mitochondrion	25.86	30.46
CDY66550	Canola	mitochondrion	19.4	30.1
CDY43367	Canola	mitochondrion	25.43	29.95
AT3G13160.1	Thale cress	mitochondrion	25.22	29.7
CDX82550	Canola	mitochondrion	24.78	29.26
Bra001492.1-P	Field mustard	mitochondrion	24.57	28.5
Solyc02g079820.2.1	Tomato	cytosol, plastid	18.75	27.8
HORVU3Hr1G077780.1	Barley	mitochondrion	23.06	27.44
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	13.36	26.61
CDY24210	Canola	plastid	23.06	24.43
HORVU6Hr1G094400.1	Barley	plastid	22.84	24.42
CDY43368	Canola	plastid	22.84	24.15
HORVU5Hr1G041750.1	Barley	cytosol	18.1	23.66
HORVU1Hr1G042520.2	Barley	mitochondrion	22.63	23.33
Bra039372.1-P	Field mustard	cytosol, plastid	23.28	22.59
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	18.97	22.51
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	18.97	22.51
HORVU3Hr1G101970.1	Barley	cytosol	8.84	22.4
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	20.91	21.6
HORVU6Hr1G059290.1	Barley	cytosol	21.55	20.79
AT3G13150.1	Thale cress	plastid	23.49	19.78
HORVU3Hr1G070290.2	Barley	mitochondrion	16.38	19.19

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287TI91	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU6Hr1G019320	EnsemblPlants:HORVU6Hr1G019320.1	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B477947	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:52051618..52053510

Molecular Weight (calculated)

50788.2 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.275

Length

464 amino acids

Sequence
(BLAST)

001: PIIPLLTPQP FPTIRGLPMS SLAAAIAAAA ATASTWATNL SRILSSSKPT LKPKTQRAPT PTPTPKPPAA DAASIADQKL PKPLGPQPLG VNLKALIRER
101: DPDKLVSKFV QASSASPGFR DRPRAYMVAV SRLASLGRRD GIEAIIDAQK PFLETSTEGF ATRLIRLYGG ASMPSHAAAT FHQLPAQHKS TRTFNAVLAA
201: YSQAGDLDAL TAAFQEIPAT HPSIVPTVYS YNVLIRTLCH KSDLSAALDA VLVMEKRGVS PDIVTFNTLL NGFLSCGRND EAETVWEMIK ARNLEPDAKC
301: YNARLQGLVA QGRVDDAAAV LERLEKDGPK PNIVSYNELI RGYCKAGRLQ EAKKMYDNLM KNECVPDKGT YETLLPHLLQ AGELDCALRY CYQIFGTKRC
401: CGVEYGVLQD VVNALVDASR LKEATKLDEL KWKYSSRMPP SAEMMRKNQY QMKRSVEVED ETEK

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.