Factsheet for HORVU6Hr1G094400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G473500.1	Wheat	mitochondrion	94.01	96.45
TraesCS6D01G401100.1	Wheat	mitochondrion	92.63	95.04
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	46.31	86.27
HORVU3Hr1G101970.1	Barley	cytosol	33.64	79.78
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	64.75	71.87
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	64.75	71.87
Os02t0829800-01	Rice	mitochondrion	69.59	71.39
EES07814	Sorghum	mitochondrion, plastid	68.43	70.88
Zm00001d018534_P001	Maize	mitochondrion	67.74	70.17
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	29.72	47.08
HORVU1Hr1G042520.2	Barley	mitochondrion	36.18	34.89
VIT_01s0010g01460.t01	Wine grape	mitochondrion	30.41	34.2
HORVU3Hr1G077780.1	Barley	mitochondrion	25.58	28.46
HORVU3Hr1G077400.1	Barley	cytosol	22.12	25.07
HORVU6Hr1G059290.1	Barley	cytosol	26.5	23.91
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	23.96	23.16
HORVU6Hr1G019320.1	Barley	plastid	24.42	22.84
HORVU3Hr1G077440.2	Barley	mitochondrion	23.73	20.98
HORVU3Hr1G070290.2	Barley	mitochondrion	19.12	20.96
HORVU5Hr1G041750.1	Barley	cytosol	17.05	20.85

Protein Annotations

EMBL:AK356073	EnsemblPlants:HORVU6Hr1G094400.1	EnsemblPlantsGene:HORVU6Hr1G094400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF518	PFAM:PF12854	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000B480E86	UniProt:A0A287V9C1	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:581140213..581142732

Molecular Weight (calculated)

46206.6 Da

IEP (calculated)

9.788

GRAVY (calculated)

0.062

Length

434 amino acids

Sequence
(BLAST)

001: SRALLPPPNP SPMAAAAALR RALAPAPALL LRRQALVRLL STQNQSPAAP TISPAELVRI KNSIRSAATP PDELAALFLK GIPHTPFLGD RSIFSLAVSR
101: LTAAARPDLV SSVLSASLTA LPAPHPSEGF LIRLIALYAD AGMPTHSLST FRLVVPPSDR ALSALLAAYH DAGQPARAIQ AFRDLSAELS IAPGVVSHNV
201: LLKCMVATGD VAGARQVFDG MPDKAGLQPD IVSCNEMLKG YLKTGDYAAF DLLLKEVTGG KRRLKPNVTT YKLRMSGLCA KGRSFEAEEL LEAMGANGVP
301: PNRECFNTVI GGLCKEGEVG AAVALFKRMP EVPRPNGKGV SPNFETYIML IEALVENNAF VPALEVCKEC LANKWAPPFQ AVKGLIQGLV KSRKVKHAKE
401: LGMAMKKAAK GDAKEEWEKV EADAFQLALA EMKA

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.