Factsheet for TraesCS6D01G401100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G473500.1	Wheat	mitochondrion	97.4	97.4
HORVU6Hr1G094400.1	Barley	plastid	95.04	92.63
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	44.92	81.55
HORVU3Hr1G101970.1	Barley	cytosol	32.86	75.96
EES07814	Sorghum	mitochondrion, plastid	70.69	71.36
Os02t0829800-01	Rice	mitochondrion	70.92	70.92
Zm00001d018534_P001	Maize	mitochondrion	70.21	70.88
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	63.59	68.8
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	63.59	68.8
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	30.73	47.45
VIT_01s0010g01460.t01	Wine grape	mitochondrion	31.21	34.2
TraesCS3D01G319900.1	Wheat	mitochondrion	22.46	28.11
TraesCS6D01G214000.1	Wheat	mitochondrion	26.0	23.81
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	24.59	23.37
TraesCS3D01G325200.1	Wheat	plastid	24.35	22.94
TraesCS3D01G317700.1	Wheat	plastid	24.59	22.03
TraesCS3D01G317800.1	Wheat	plastid	23.64	19.88

Protein Annotations

EnsemblPlants:TraesCS6D01G401100.1	EnsemblPlantsGene:TraesCS6D01G401100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF518
PFAM:PF12854	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6D:+:470573072..470574638

Molecular Weight (calculated)

45170.5 Da

IEP (calculated)

9.973

GRAVY (calculated)

0.104

Length

423 amino acids

Sequence
(BLAST)

001: MAAAAAALRR ALAPAPALLL RRQALVRLLS TQAQSSTAPT ISPAELVRIK NSIRSAATPP DELAALFLKG ILHPPFLGDR SIFSLAVSRL TAAARPDLVS
101: SVLSASLTAL PAPHPSEGFL IRLIALYAAA GMPTHSLSTF RLVVPPSDRA LSALLGAYHY AGQPARAIEA FRDLPAELSI TPGVVSHNVL LKCMVATGDV
201: AGARQVFDGM PDKAGVQPDI VSCNEMLKGY LKTGDHAAFD LLLKEVTGGK RRLKPNVTTY KLRMSALCAK GRSFEAEELL DAMGANRVPP NRECFNTVIG
301: GLCKEGEVGA AVALFKRMPE VPRHNGKGVS PNFETYIMLI EALVESNAFV PALELCKECL AKKWAPPFQA VKGLIQGLVK SRKVKHAKEL GMAMKKAAKG
401: DAKEEWEKVE ADAFQLALAE MKA

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.