Factsheet for HORVU6Hr1G047990.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	100.0	100.0
HORVU3Hr1G101970.1	Barley	cytosol	45.27	96.72
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	53.96	90.56
TraesCS6B01G473500.1	Wheat	mitochondrion	70.08	64.78
HORVU6Hr1G094400.1	Barley	plastid	71.87	64.75
TraesCS6D01G401100.1	Wheat	mitochondrion	68.8	63.59
EES07814	Sorghum	mitochondrion, plastid	52.94	49.4
Os02t0829800-01	Rice	mitochondrion	53.2	49.17
Zm00001d018534_P001	Maize	mitochondrion	52.43	48.93
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	23.27	33.21
HORVU1Hr1G042520.2	Barley	mitochondrion	29.41	25.56
VIT_01s0010g01460.t01	Wine grape	mitochondrion	23.79	24.09
HORVU3Hr1G077780.1	Barley	mitochondrion	21.99	22.05
HORVU3Hr1G077400.1	Barley	cytosol	19.95	20.37
HORVU5Hr1G041750.1	Barley	cytosol	17.39	19.15
HORVU6Hr1G019320.1	Barley	plastid	22.51	18.97
HORVU3Hr1G070290.2	Barley	mitochondrion	18.67	18.43
HORVU7Hr1G049150.5	Barley	mitochondrion, plastid	20.72	18.04
HORVU6Hr1G059290.1	Barley	cytosol	20.97	17.05
HORVU3Hr1G077440.2	Barley	mitochondrion	21.23	16.9

Protein Annotations

EnsemblPlants:HORVU6Hr1G047990.1	EnsemblPlantsGene:HORVU6Hr1G047990	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF518
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000B47AD0C
UniProt:A0A287U4G0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:288327613..288329012

Molecular Weight (calculated)

41947.5 Da

IEP (calculated)

8.361

GRAVY (calculated)

-0.127

Length

391 amino acids

Sequence
(BLAST)

001: YSAVARPAQN LCPSRSRNGL HQKRDKASKR LGVRSPCIHH QPRRARPHQE LHPQRRHAAR RVGRPLLEGD PHTPFLGDCS IFSLAVSLLT AAAHPDLVSS
101: VLFASLTALP ASHPSEGFLI RLISLYAAAG MPTHSLSTSH LVVSPSDHAL SALLAAYYDA GQPARAIQAF RDLSAELSIE PGVVSHNVLL KCMVATGDVA
201: GARQVFDGMI DKAGLQLDIV SCNEMLKGYL KTGDYAAFDL LLKEVTGGKR RLKPNVTTYK LRMSGLCAKG RSFEAEELLE AMAANGVPPN WECFNTVIGG
301: LCNEGEVGAA VAMFKRMPEV PRPNGKGVSP NFETYIILIE ALVKNNAFVT ALQQVGAAVP GCQGSDLRAG QEQEGEACQG ARHGNEEFCQ G

Best Arabidopsis Sequence Match ( AT3G13150.1 )
(BLAST)

001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.