Factsheet for Os02t0829800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 7
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

mitochondrion: 19010998
nucleus: 19621931
mitochondrion: 23027867

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07814	Sorghum	mitochondrion, plastid	75.18	75.89
Zm00001d018534_P001	Maize	mitochondrion	75.18	75.89
TraesCS6B01G473500.1	Wheat	mitochondrion	71.87	71.87
TraesCS6D01G401100.1	Wheat	mitochondrion	70.92	70.92
HORVU6Hr1G094400.1	Barley	plastid	71.39	69.59
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	35.46	64.38
HORVU3Hr1G101970.1	Barley	cytosol	26.0	60.11
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	49.17	53.2
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	49.17	53.2
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	30.73	47.45
Os10t0484900-00	Rice	mitochondrion	39.72	39.25
VIT_01s0010g01460.t01	Wine grape	mitochondrion	34.99	38.34
Os01t0793200-01	Rice	mitochondrion	26.24	28.46
Os01t0785700-01	Rice	mitochondrion	24.82	24.19
Os08t0499800-01	Rice	mitochondrion	24.59	23.48
Os02t0633200-01	Rice	mitochondrion	23.4	21.76
Os10t0485000-01	Rice	cytosol	16.31	6.4

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4331241	EMBL:AK242435	ProteinID:BAD22943.1	ProteinID:BAF10523.1
ProteinID:BAS81732.1	ProteinID:EAZ25183.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os02g0829800
EnsemblPlants:Os02t0829800-01	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF518	InterPro:Pentatricopeptide_repeat
UniProt:Q6K9T5	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00003B04B8	RefSeq:XP_015627696.1	SEG:seg

Description

Pentatricopeptide repeat domain containing protein. (Os02t0829800-01)

Coordinates

chr2:-:35674827..35676413

Molecular Weight (calculated)

45751.5 Da

IEP (calculated)

10.162

GRAVY (calculated)

-0.070

Length

423 amino acids

Sequence
(BLAST)

001: MAAAAALRRS LAAGPAPALL LRRQLLMRFL STQTQSQTQT PADLATLKNS IRSAAHTPEA LADLFISGLS HPAFLADRPI FTLSVHRLAS AGRRDLVASI
101: LSSSLTSLPA PHPSEGFLIR LISLYSAAGM PDHSLSTFRI VTPPSDRALS ALLSAYHDNR LYDRAIQAFR TLPAELGIKP SVVSHNVLLK SFVASGDLAS
201: ARALFDEMPS KADVEPDIVS CNEILKGYLN AADYAAFDQF LKDNTTAAGG KRRLKPNVST YNLRMASLCS KGRSFEAAEL LDAMEAKGVP PNRGSFNTVI
301: QGLCKEGEVG AAVAIFKRMP EVPRPNGKGV LPNSETYIML LEGLVNKGVF APALEVFKEC LQNKWAPPFQ AVQGLIKGLL KSRKAKHAKE VAMAMRKVVK
401: GDAKEEWKKV EAEFSFEPTD KKA

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.