CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018534_P001	Maize	mitochondrion	92.36	92.36
Os02t0829800-01	Rice	mitochondrion	75.89	75.18
TraesCS6B01G473500.1	Wheat	mitochondrion	72.08	71.39
TraesCS6D01G401100.1	Wheat	mitochondrion	71.36	70.69
HORVU6Hr1G094400.1	Barley	plastid	70.88	68.43
HORVU2Hr1G030800.1	Barley	cytosol, extracellular	35.32	63.52
HORVU3Hr1G101970.1	Barley	cytosol	27.21	62.3
HORVU5Hr1G013060.2	Barley	cytosol, mitochondrion, plastid	49.4	52.94
HORVU6Hr1G047990.1	Barley	cytosol, mitochondrion, plastid	49.4	52.94
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	30.31	46.35
VIT_01s0010g01460.t01	Wine grape	mitochondrion	35.08	38.08
EER91465	Sorghum	mitochondrion	37.71	35.91
EES01589	Sorghum	mitochondrion	24.82	26.53
EES01579	Sorghum	mitochondrion	24.34	23.78
EES01580	Sorghum	mitochondrion	24.34	23.23
EES15434	Sorghum	plastid	25.78	23.23
EES05467	Sorghum	mitochondrion	24.82	22.22
EER95222	Sorghum	mitochondrion	23.63	20.08

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8056254	UniProt:C5XWQ6	EnsemblPlants:EES07814	ProteinID:EES07814
ProteinID:EES07814.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF518	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3004G356300	unigene:Sbi.12186
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A861B5	RefSeq:XP_002454838.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:68359632..68363059

Molecular Weight (calculated)

45308.2 Da

IEP (calculated)

10.006

GRAVY (calculated)

-0.044

Length

419 amino acids

Sequence
(BLAST)

001: MASAAAALCR SPSLLSRRHL LVRLLSTQTQ LATPPTPTTP ADLSRLKSSI RDAATSPDAL ATLFLSGLPH PAFLADRPLF ALSVHRLASA GRRDLVASVL
101: SSSLTALPSP HPSEGFLLRL ISLYSAAGMP DHSLTVFRLV NPPSDRALSA LLSTYHDNRL YDRAVRAFNT LPAELGIKPG LVSHNVLLKA LVASGDIAAA
201: RSAFDKMPDT AGVQPDIVSC NEILKGYLST GDDAAFDQLV KEIAGPNRRL KPNVGTYNLR MAMLCSKERS FEAEELLDAM GANGVPPNRA SFNTVIKGLC
301: NEGEVGAAMA LFKRMPEVPR QKGKGVSPNF ETYIMLLEAL VNKNLFDPAL EVCKECLHNK WAPPFQAVKG LVESLLKSRK AKHAREVLMA MRKAVKGDAK
401: QEWTKVEAQF PMLLADKKA

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.