CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES07083
KXG26554

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	EES05647	AT3G27960.1	21798944
AT1G55890.1	EES07083	AT4G24690.1	21798944
AT1G55890.1	KXG26554	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01580	Sorghum	mitochondrion	61.54	60.14
HORVU3Hr1G077400.1	Barley	cytosol	51.05	57.18
EER95222	Sorghum	mitochondrion	61.31	53.35
Os01t0785700-01	Rice	mitochondrion	53.85	53.23
TraesCS3B01G353300.1	Wheat	plastid	51.05	52.39
TraesCS3A01G324200.1	Wheat	plastid	54.78	51.65
TraesCS3A01G331700.1	Wheat	plastid	51.28	51.52
TraesCS3B01G361800.1	Wheat	plastid	52.45	51.25
TraesCS3A01G324500.1	Wheat	plastid	55.94	50.74
TraesCS3A01G324300.1	Wheat	plastid	51.05	50.69
TraesCS3D01G317700.1	Wheat	plastid	55.01	50.0
TraesCS3D01G325200.1	Wheat	plastid	51.75	49.44
HORVU3Hr1G077440.2	Barley	mitochondrion	56.18	49.08
TraesCS3A01G331600.1	Wheat	plastid	52.21	48.8
TraesCS3D01G317800.1	Wheat	plastid	55.24	47.12
TraesCS3B01G353500.1	Wheat	plastid	55.01	46.92
HORVU6Hr1G019320.1	Barley	plastid	50.35	46.55
VIT_00s0271g00040.t01	Wine grape	cytosol	19.81	41.67
GSMUA_Achr10P...	Banana	mitochondrion	38.69	41.4
VIT_00s0274g00040.t01	Wine grape	mitochondrion	32.87	36.91
VIT_00s0271g00070.t01	Wine grape	mitochondrion	31.7	35.88
VIT_00s0271g00080.t01	Wine grape	mitochondrion	30.3	35.81
PGSC0003DMT400012953	Potato	cytosol	31.24	35.36
Solyc03g031460.1.1	Tomato	plastid	31.0	35.09
Bra039373.1-P	Field mustard	cytosol	21.21	33.21
KRH41973	Soybean	nucleus	29.37	33.07
AT1G55890.1	Thale cress	mitochondrion	29.6	31.91
CDY24208	Canola	mitochondrion	29.14	31.73
KRH49916	Soybean	cytosol	29.37	31.5
CDY43367	Canola	mitochondrion	28.9	31.47
VIT_00s0271g00050.t01	Wine grape	mitochondrion	16.55	31.28
CDX82550	Canola	mitochondrion	28.21	30.79
AT3G13160.1	Thale cress	mitochondrion	28.21	30.71
Bra001492.1-P	Field mustard	mitochondrion	28.44	30.5
Bra037096.1-P	Field mustard	mitochondrion	27.51	29.72
CDY08267	Canola	mitochondrion	27.51	29.72
CDY66550	Canola	mitochondrion	20.51	29.43
CDY26081	Canola	mitochondrion	27.04	29.29
PGSC0003DMT400055889	Potato	plastid	26.34	28.75
PGSC0003DMT400071165	Potato	extracellular	11.65	28.41
Solyc02g079830.1.1	Tomato	mitochondrion	26.34	28.25
PGSC0003DMT400055888	Potato	mitochondrion	24.48	27.85
Solyc02g079820.2.1	Tomato	cytosol, plastid	19.58	26.84
CDY24210	Canola	plastid	26.11	25.57
CDY43368	Canola	plastid	26.11	25.51
EES01589	Sorghum	mitochondrion	22.61	24.74
EES07814	Sorghum	mitochondrion, plastid	23.78	24.34
Bra039372.1-P	Field mustard	cytosol, plastid	26.11	23.43
EES15434	Sorghum	plastid	23.54	21.72
AT3G13150.1	Thale cress	plastid	27.74	21.6
EER91465	Sorghum	mitochondrion	21.91	21.36
EES05467	Sorghum	mitochondrion	21.91	20.09

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8082371	UniProt:C5XLS7	EnsemblPlants:EES01579	ProteinID:EES01579
ProteinID:EES01579.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3003G320100	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A84411	RefSeq:XP_002456459.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:64798870..64800807

Molecular Weight (calculated)

47247.6 Da

IEP (calculated)

8.382

GRAVY (calculated)

-0.365

Length

429 amino acids

Sequence
(BLAST)

001: MAMATPAACY RTRRLFSILS TATPCARPPN NLVPEPAPAQ KAAAGEAEAK PKAGRNRRNP LGKIMRVISE ERDPDKLVSQ FIAASTASPR FRDNRRVYEV
101: AVSRLASFGR RDAVAALLDS QKPFLEASNE DFTVRILRLY GRASMPSHAA ATFVGLPPKH KSVAAFNALL AAYVDTGDFD SLAIALDEIP GSQKAEPSAA
201: LDVISLMDKC GLTPDMVSFN SLLNGFYNNG RFDKAEKIWE MMKERNLQPN AKTYNAKLRG LVAEGRMEDA AAVIQRMLKE GPKPDSVSYN ELIRGYCKEG
301: RLDESKKVYD ELVKNGYAPN KGTFETLIPC LVEVGELDLA LNCCQEIFNR KCRVKCSLLQ AVVTALVAAS RVEEARRIVK LGWKNNYPPR HLNIPALKGK
401: DNNVDAETDC NDSVPYEEGS EEEVESKIA

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.