Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G082590.15 | |
| HORVU6Hr1G053250.1 | |
| HORVU6Hr1G069310.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G55890.1 | HORVU6Hr1G069310.1 | AT3G27960.1 | 21798944 |
| AT1G55890.1 | HORVU2Hr1G082590.15 | AT4G24690.1 | 21798944 |
| AT1G55890.1 | HORVU6Hr1G053250.1 | AT4G24690.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G324500.1 | Wheat | plastid | 85.13 | 88.37 |
| TraesCS3B01G353500.1 | Wheat | plastid | 89.41 | 87.28 |
| TraesCS3D01G317800.1 | Wheat | plastid | 87.58 | 85.49 |
| HORVU3Hr1G077400.1 | Barley | cytosol | 66.4 | 85.12 |
| HORVU6Hr1G019320.1 | Barley | plastid | 66.6 | 70.47 |
| Os01t0785700-01 | Rice | mitochondrion | 55.8 | 63.13 |
| Zm00001d012606_P001 | Maize | mitochondrion | 52.55 | 56.95 |
| EES01580 | Sorghum | mitochondrion | 50.92 | 56.95 |
| EES01579 | Sorghum | mitochondrion | 49.08 | 56.18 |
| EER95222 | Sorghum | mitochondrion | 51.73 | 51.52 |
| GSMUA_Achr10P... | Banana | mitochondrion | 38.7 | 47.38 |
| VIT_00s0271g00040.t01 | Wine grape | cytosol | 15.89 | 38.24 |
| VIT_00s0274g00040.t01 | Wine grape | mitochondrion | 28.31 | 36.39 |
| VIT_00s0271g00070.t01 | Wine grape | mitochondrion | 27.9 | 36.15 |
| VIT_00s0271g00050.t01 | Wine grape | mitochondrion | 16.7 | 36.12 |
| VIT_00s0271g00080.t01 | Wine grape | mitochondrion | 26.48 | 35.81 |
| PGSC0003DMT400012953 | Potato | cytosol | 26.68 | 34.56 |
| Solyc03g031460.1.1 | Tomato | plastid | 26.48 | 34.3 |
| Bra039373.1-P | Field mustard | cytosol | 18.94 | 33.94 |
| PGSC0003DMT400071165 | Potato | extracellular | 12.02 | 33.52 |
| Bra037096.1-P | Field mustard | mitochondrion | 26.48 | 32.75 |
| CDY08267 | Canola | mitochondrion | 26.48 | 32.75 |
| AT1G55890.1 | Thale cress | mitochondrion | 26.48 | 32.66 |
| CDY26081 | Canola | mitochondrion | 26.27 | 32.58 |
| KRH41973 | Soybean | nucleus | 25.25 | 32.55 |
| AT3G13160.1 | Thale cress | mitochondrion | 25.66 | 31.98 |
| CDY24208 | Canola | mitochondrion | 25.66 | 31.98 |
| PGSC0003DMT400055888 | Potato | mitochondrion | 24.44 | 31.83 |
| CDY43367 | Canola | mitochondrion | 25.46 | 31.73 |
| CDX82550 | Canola | mitochondrion | 25.25 | 31.55 |
| PGSC0003DMT400055889 | Potato | plastid | 25.25 | 31.55 |
| Solyc02g079830.1.1 | Tomato | mitochondrion | 25.66 | 31.5 |
| KRH49916 | Soybean | cytosol | 25.25 | 31.0 |
| Bra001492.1-P | Field mustard | mitochondrion | 25.25 | 31.0 |
| CDY66550 | Canola | mitochondrion | 18.74 | 30.77 |
| Solyc02g079820.2.1 | Tomato | cytosol, plastid | 17.72 | 27.8 |
| HORVU2Hr1G030800.1 | Barley | cytosol, extracellular | 12.22 | 25.75 |
| HORVU3Hr1G077780.1 | Barley | mitochondrion | 19.76 | 24.87 |
| HORVU6Hr1G059290.1 | Barley | cytosol | 24.03 | 24.53 |
| CDY24210 | Canola | plastid | 21.59 | 24.2 |
| CDY43368 | Canola | plastid | 21.59 | 24.15 |
| HORVU6Hr1G094400.1 | Barley | plastid | 20.98 | 23.73 |
| HORVU1Hr1G042520.2 | Barley | mitochondrion | 21.18 | 23.11 |
| HORVU5Hr1G041750.1 | Barley | cytosol | 16.09 | 22.25 |
| Bra039372.1-P | Field mustard | cytosol, plastid | 21.38 | 21.97 |
| HORVU7Hr1G049150.5 | Barley | mitochondrion, plastid | 19.96 | 21.83 |
| HORVU5Hr1G013060.2 | Barley | cytosol, mitochondrion, plastid | 16.9 | 21.23 |
| HORVU6Hr1G047990.1 | Barley | cytosol, mitochondrion, plastid | 16.9 | 21.23 |
| HORVU3Hr1G101970.1 | Barley | cytosol | 7.74 | 20.77 |
| AT3G13150.1 | Thale cress | plastid | 22.61 | 20.15 |
| HORVU3Hr1G070290.2 | Barley | mitochondrion | 15.27 | 18.94 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G077440.2 | EnsemblPlantsGene:HORVU3Hr1G077440 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1622 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 | UniParc:UPI000B4835FC |
| UniProt:A0A287LSJ8 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:573115332..573120842
Molecular Weight (calculated)
53885.3 Da
IEP (calculated)
7.768
GRAVY (calculated)
-0.402
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: LLSPQTPTVR RLHMTTPAAA AAAAATAAST RANSLSRIFS SSSPVISPPK RSPKTKRAPT PTPTPKPPAA DAGSIADEKP PKPVGAQPAA KAESNAKHKL
101: PKPLGIILKA LIRQRDPDKL VSDFVQASTV SSRFRDRHRV FEVAVSRLNS LGRQDGIEAI IEAQMPFLET SAEGFAARLI RLYGRASMPS HAAATFHKLP
201: AQHKSTMTFN SVLSAYADAG DFDGLTAAFQ EIPATHPSIV PTVYSYNVLI HALCQKPDIS AALDAVHLME KHGIPPDIIT FNTLLNGFCN NGRVHEAETV
301: WEMIKERNLE PDAKCYNAKL RGLVAEGRID DAAAVLERLE KDGPKPDTVS YNELIRGYCK AGRLQEAKKL YDDLVKNECT PNKGTYETLL PQLLQAGELD
401: CALTYCYKIF SDKRNLRVEC GVLQDVVNAL VDVSRVEEAA KIVVLGRKKY YPRKGLRMPD RTKDSELRAE TDEEEAISEE EECEVEHETE K
101: PKPLGIILKA LIRQRDPDKL VSDFVQASTV SSRFRDRHRV FEVAVSRLNS LGRQDGIEAI IEAQMPFLET SAEGFAARLI RLYGRASMPS HAAATFHKLP
201: AQHKSTMTFN SVLSAYADAG DFDGLTAAFQ EIPATHPSIV PTVYSYNVLI HALCQKPDIS AALDAVHLME KHGIPPDIIT FNTLLNGFCN NGRVHEAETV
301: WEMIKERNLE PDAKCYNAKL RGLVAEGRID DAAAVLERLE KDGPKPDTVS YNELIRGYCK AGRLQEAKKL YDDLVKNECT PNKGTYETLL PQLLQAGELD
401: CALTYCYKIF SDKRNLRVEC GVLQDVVNAL VDVSRVEEAA KIVVLGRKKY YPRKGLRMPD RTKDSELRAE TDEEEAISEE EECEVEHETE K
001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.