Factsheet for TraesCS3D01G317800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G327000.1
TraesCS2B01G355000.6
TraesCS2D01G335900.1
TraesCS6A01G208300.2
TraesCS6A01G274500.1
TraesCS6B01G236800.1
TraesCS6B01G302000.1
TraesCS6D01G191900.3
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS2A01G327000.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS2B01G355000.6	AT4G24690.1	21798944
AT1G55890.1	TraesCS2D01G335900.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6A01G208300.2	AT4G24690.1	21798944
AT1G55890.1	TraesCS6B01G236800.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6D01G191900.3	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G324500.1	Wheat	plastid	88.27	93.87
TraesCS3B01G353500.1	Wheat	plastid	92.64	92.64
HORVU3Hr1G077440.2	Barley	mitochondrion	85.49	87.58
TraesCS3D01G317700.1	Wheat	plastid	74.95	79.87
TraesCS3D01G325200.1	Wheat	plastid	64.41	72.16
Os01t0785700-01	Rice	mitochondrion	53.28	61.75
EES01580	Sorghum	mitochondrion	49.7	56.95
Zm00001d012606_P001	Maize	mitochondrion	50.1	55.63
EES01579	Sorghum	mitochondrion	47.12	55.24
EER95222	Sorghum	mitochondrion	50.3	51.32
GSMUA_Achr10P...	Banana	mitochondrion	38.17	47.88
VIT_00s0271g00050.t01	Wine grape	mitochondrion	16.9	37.44
VIT_00s0271g00040.t01	Wine grape	cytosol	15.11	37.25
VIT_00s0271g00070.t01	Wine grape	mitochondrion	27.44	36.41
VIT_00s0274g00040.t01	Wine grape	mitochondrion	27.44	36.13
VIT_00s0271g00080.t01	Wine grape	mitochondrion	25.65	35.54
PGSC0003DMT400012953	Potato	cytosol	25.45	33.77
Bra039373.1-P	Field mustard	cytosol	18.29	33.58
Solyc03g031460.1.1	Tomato	plastid	25.05	33.25
Bra037096.1-P	Field mustard	mitochondrion	25.65	32.49
CDY08267	Canola	mitochondrion	25.65	32.49
AT1G55890.1	Thale cress	mitochondrion	25.65	32.41
CDY26081	Canola	mitochondrion	25.45	32.32
PGSC0003DMT400071165	Potato	extracellular	11.13	31.82
KRH41973	Soybean	nucleus	24.06	31.76
CDY24208	Canola	mitochondrion	24.85	31.73
AT3G13160.1	Thale cress	mitochondrion	24.85	31.73
CDX82550	Canola	mitochondrion	24.65	31.55
CDY43367	Canola	mitochondrion	24.65	31.47
CDY66550	Canola	mitochondrion	18.49	31.1
Solyc02g079830.1.1	Tomato	mitochondrion	24.45	30.75
Bra001492.1-P	Field mustard	mitochondrion	24.45	30.75
PGSC0003DMT400055888	Potato	mitochondrion	22.86	30.5
PGSC0003DMT400055889	Potato	plastid	23.66	30.28
KRH49916	Soybean	cytosol	24.06	30.25
Solyc02g079820.2.1	Tomato	cytosol, plastid	16.5	26.52
TraesCS6D01G214000.1	Wheat	mitochondrion	22.66	24.68
CDY24210	Canola	plastid	20.68	23.74
CDY43368	Canola	plastid	20.68	23.69
TraesCS6D01G401100.1	Wheat	mitochondrion	19.88	23.64
TraesCS3D01G319900.1	Wheat	mitochondrion	15.31	22.78
TraesCS7D01G240000.1	Wheat	endoplasmic reticulum, plastid	19.88	22.47
Bra039372.1-P	Field mustard	cytosol, plastid	20.48	21.55
AT3G13150.1	Thale cress	plastid	21.27	19.42

Protein Annotations

EnsemblPlants:TraesCS3D01G317800.1	EnsemblPlantsGene:TraesCS3D01G317800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1622	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:431831906..431833417

Molecular Weight (calculated)

55117.9 Da

IEP (calculated)

8.383

GRAVY (calculated)

-0.392

Length

503 amino acids

Sequence
(BLAST)

001: MSRQNPPSPI HSPLLSPQTP TVRRLPMATT AAAAAAATAT ASTRANSLSR IFSSSSPTVK PPKHNPNTKS TPKPKPTPKP PAADAGSIAD EKPPKPLGAR
101: PAAKGDSDGK HKIPKPLGLL VKALIRQRDP DKLISGFIQA STVSSRFRDR YRVFEVAVSR LASLGRQDGI EAIIEAQLPF LEASAEGFAT RLIRLYGRAS
201: MPSHAAATFH KLPAQHKSNM TFNSLLSCYA DAGDFDGLTT AFQEIPATYP SIVPTVYSYN VLIHALCQKP DISAALETVL LMEKRGVSPD IITFNTLLNG
301: FCNNVGVDEA ETVWEMIKER NLEPDAKCYN AKLRGLVAEG RIDDAAAVLE GLEKDGPKPD TVSYNELIRG YCKAGKLQEA KKLYDDLVKN ECAPNKGTYE
401: TLLPHLLQAG ELDCALTYCY KIFSHKRNLR VECGVLQDVV NALVDVWRVE EAAKIVVLRR KKYYPRKGLR MPDSAKDSQL RAETNDEEAI SEEECEVEHE
501: TEK

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.