Factsheet for PGSC0003DMT400055888

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079820.2.1	Tomato	cytosol, plastid	69.76	84.03
PGSC0003DMT400071165	Potato	extracellular	30.5	65.34
PGSC0003DMT400055889	Potato	plastid	57.56	55.22
VIT_00s0271g00050.t01	Wine grape	mitochondrion	27.06	44.93
VIT_00s0271g00070.t01	Wine grape	mitochondrion	41.91	41.69
PGSC0003DMT400012953	Potato	cytosol	39.79	39.58
VIT_00s0271g00040.t01	Wine grape	cytosol	19.36	35.78
GSMUA_Achr10P...	Banana	mitochondrion	36.6	34.41
CDY43368	Canola	plastid	37.93	32.57
CDY24210	Canola	plastid	37.14	31.96
HORVU3Hr1G077400.1	Barley	cytosol	29.97	29.5
Bra039372.1-P	Field mustard	cytosol, plastid	37.4	29.5
TraesCS3A01G324300.1	Wheat	plastid	32.36	28.24
TraesCS3B01G353300.1	Wheat	plastid	30.77	27.75
TraesCS3D01G325200.1	Wheat	plastid	32.89	27.62
TraesCS3B01G361800.1	Wheat	plastid	32.1	27.56
TraesCS3A01G331700.1	Wheat	plastid	31.03	27.4
TraesCS3D01G317700.1	Wheat	plastid	34.22	27.33
Os01t0785700-01	Rice	mitochondrion	31.3	27.19
Zm00001d012606_P001	Maize	mitochondrion	32.1	26.71
TraesCS3A01G324200.1	Wheat	plastid	32.1	26.59
PGSC0003DMT400072924	Potato	mitochondrion	28.38	26.42
TraesCS3A01G331600.1	Wheat	plastid	32.1	26.36
AT3G13150.1	Thale cress	plastid	37.4	25.59
EES01580	Sorghum	mitochondrion	29.44	25.28
HORVU6Hr1G019320.1	Barley	plastid	31.03	25.22
TraesCS3A01G324500.1	Wheat	plastid	31.03	24.74
EES01579	Sorghum	mitochondrion	27.85	24.48
HORVU3Hr1G077440.2	Barley	mitochondrion	31.83	24.44
PGSC0003DMT400090439	Potato	plastid	26.26	24.38
PGSC0003DMT400029367	Potato	mitochondrion	25.73	24.13
PGSC0003DMT400039992	Potato	cytosol	25.46	23.36
TraesCS3B01G353500.1	Wheat	plastid	31.03	23.26
TraesCS3D01G317800.1	Wheat	plastid	30.5	22.86
EER95222	Sorghum	mitochondrion	29.18	22.31

Protein Annotations

EnsemblPlants:PGSC0003DMT400055888	EnsemblPlantsGene:PGSC0003DMG400021711	EntrezGene:107058656	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1052	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400021711	RefSeq:XP_015160115.1
TIGRFAMs:TIGR00756	UniParc:UPI000296BD80	UniProt:M1BYQ6	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021711]

Coordinates

chr2:+:35551607..35553025

Molecular Weight (calculated)

43002.4 Da

IEP (calculated)

9.354

GRAVY (calculated)

-0.255

Length

377 amino acids

Sequence
(BLAST)

001: MSTSSPLRRV KGIFTGNDRA INQPITSSRP TNLAQAIVDS FKKSSECPKF RLKRVQYEIT AHQLTEAKHK SGIIDIIEHQ KNYPDIRNEA FVARLILLYG
101: KAKMDHHARK LFDEMPQLNC PRTVFSFNAL LEAYLKSEKY DKIGGLFREL PPKLSIEPDL VSYNTGIKAL CRAGLLDSAV YLMDEIENHG IKPNIVTCNT
201: LLKAFHESKR FSEAESLWAM MEKRNIIPDL CSYNIKLTSL VKAKEVSKAI QFFEEIVNKG FKPDNFSYSA MIKMYVIKGN LEEVNMWYDK MTQNGCLPDV
301: STLTILISFA CSAKKIDFAL DLCKKAMNSR KAIHNTIMQR VVNCLVEHSK IENARELVKL AESYKSFPYE LSLPLHS

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.