Factsheet for VIT_00s0271g00070.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0271g00040.t01	Wine grape	cytosol	53.3	99.02
VIT_00s0271g00050.t01	Wine grape	mitochondrion	55.67	92.95
VIT_00s0274g00040.t01	Wine grape	mitochondrion	54.09	53.66
VIT_00s0271g00080.t01	Wine grape	mitochondrion	50.66	52.89
PGSC0003DMT400055889	Potato	plastid	46.7	45.04
Solyc02g079830.1.1	Tomato	mitochondrion	45.65	43.25
PGSC0003DMT400055888	Potato	mitochondrion	41.69	41.91
CDY43368	Canola	plastid	46.17	39.86
CDY24210	Canola	plastid	45.91	39.73
Solyc02g079820.2.1	Tomato	cytosol, plastid	32.72	39.62
GSMUA_Achr10P...	Banana	mitochondrion	39.05	36.91
Bra039372.1-P	Field mustard	cytosol, plastid	45.38	35.98
HORVU3Hr1G077400.1	Barley	cytosol	35.88	35.51
PGSC0003DMT400071165	Potato	extracellular	15.3	32.95
TraesCS3A01G324300.1	Wheat	plastid	37.47	32.87
Os01t0785700-01	Rice	mitochondrion	36.94	32.26
AT3G13150.1	Thale cress	plastid	46.7	32.12
TraesCS3B01G353300.1	Wheat	plastid	35.36	32.06
EES01579	Sorghum	mitochondrion	35.88	31.7
EES01580	Sorghum	mitochondrion	36.41	31.44
TraesCS3A01G324200.1	Wheat	plastid	37.47	31.21
VIT_04s0023g01460.t01	Wine grape	mitochondrion	34.04	31.16
Zm00001d012606_P001	Maize	mitochondrion	36.94	30.91
TraesCS3A01G331700.1	Wheat	plastid	33.77	29.98
TraesCS3D01G317700.1	Wheat	plastid	37.2	29.87
TraesCS3B01G361800.1	Wheat	plastid	34.3	29.61
VIT_09s0002g06540.t01	Wine grape	mitochondrion	32.72	29.38
TraesCS3A01G324500.1	Wheat	plastid	36.41	29.18
TraesCS3D01G325200.1	Wheat	plastid	34.04	28.73
HORVU6Hr1G019320.1	Barley	plastid	34.83	28.45
EER95222	Sorghum	mitochondrion	36.68	28.19
TraesCS3A01G331600.1	Wheat	plastid	34.04	28.1
HORVU3Hr1G077440.2	Barley	mitochondrion	36.15	27.9
VIT_10s0116g00030.t01	Wine grape	plastid	29.02	27.78
TraesCS3D01G317800.1	Wheat	plastid	36.41	27.44
TraesCS3B01G353500.1	Wheat	plastid	35.62	26.84
VIT_01s0010g01460.t01	Wine grape	mitochondrion	26.65	26.17
VIT_10s0116g00090.t01	Wine grape	mitochondrion	17.41	25.88

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100261241	wikigene:100261241	EntrezGene:100261980	wikigene:100261980	MapMan:35.1
EMBL:AM458362	ProteinID:CAN76850	ProteinID:CAN76850.1	ProteinID:CCB62880	ProteinID:CCB62880.1	UniProt:F6I7G2
EMBL:FN596782	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0010333
GO:GO:0016787	GO:GO:0016829	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100261241	wikigene:LOC100261241	EntrezGene:LOC100261980	wikigene:LOC100261980	PFAM:PF13041	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000210ABE1	ArrayExpress:VIT_00s0271g00070	EnsemblPlantsGene:VIT_00s0271g00070	EnsemblPlants:VIT_00s0271g00070.t01	unigene:Vvi.14695	RefSeq:XP_002263756
RefSeq:XP_002263756.2	RefSeq:XP_003635178	RefSeq:XP_003635178.1	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:-:20121460..20122730

Molecular Weight (calculated)

42965.0 Da

IEP (calculated)

8.324

GRAVY (calculated)

-0.251

Length

379 amino acids

Sequence
(BLAST)

001: MSSLARRLRG IFTSPLPATT KTPAKTIKRS SSNNSSLKEM VDKFKKSSDS KRFRSRYGYY EKAVLTLAKA KKFSFIEDIL EHQKQYNEIS TEVFAVRLMT
101: LYGKAGMFEH AHKLFDELPK LNCERTVVSF NALLSVCVNS KKFDKIDGFF QELPGNLGVV PDVVSYNIIV NAFCEMGSLD SALSVLDEME KVGLEPDLIT
201: FNTLLNAFYQ NGSYADGEKI WDLMKKNNVA PNVRSYNAKL RGVISENRMS EAVELIDEMK TSGIKPDVFT LNSLMKGFCN AGNLEEAKRW YSEIARNELP
301: PVRATYMTLI PFLVEKGDFD MATELCKEVC SRRWLIEPAL LQQVLEGLVK ESKIEEATEL VELAKLKKFR ITLELPSDK

Best Arabidopsis Sequence Match ( AT3G13150.1 )
(BLAST)

001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.