Factsheet for GSMUA_Achr10P09300_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P09630_001
GSMUA_Achr9P01840_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT1G55890.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT1G55890.1	GSMUA_Achr9P01840_001	AT4G24690.1	21798944
AT1G55890.1	GSMUA_AchrUn_...	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G077400.1	Barley	cytosol	44.89	47.0
TraesCS3A01G324300.1	Wheat	plastid	46.63	43.29
TraesCS3A01G324200.1	Wheat	plastid	48.88	43.08
TraesCS3B01G353300.1	Wheat	plastid	44.89	43.06
Os01t0785700-01	Rice	mitochondrion	46.13	42.63
VIT_00s0271g00040.t01	Wine grape	cytosol	21.45	42.16
TraesCS3D01G317700.1	Wheat	plastid	49.13	41.74
TraesCS3B01G361800.1	Wheat	plastid	45.14	41.23
TraesCS3D01G325200.1	Wheat	plastid	45.89	40.98
VIT_00s0274g00040.t01	Wine grape	mitochondrion	38.9	40.84
TraesCS3A01G324500.1	Wheat	plastid	48.13	40.8
TraesCS3A01G331700.1	Wheat	plastid	43.14	40.52
VIT_00s0271g00080.t01	Wine grape	mitochondrion	36.41	40.22
TraesCS3A01G331600.1	Wheat	plastid	45.14	39.43
EES01580	Sorghum	mitochondrion	42.89	39.18
VIT_00s0271g00070.t01	Wine grape	mitochondrion	36.91	39.05
HORVU3Hr1G077440.2	Barley	mitochondrion	47.38	38.7
EES01579	Sorghum	mitochondrion	41.4	38.69
TraesCS3B01G353500.1	Wheat	plastid	48.38	38.57
VIT_00s0271g00050.t01	Wine grape	mitochondrion	21.7	38.33
TraesCS3D01G317800.1	Wheat	plastid	47.88	38.17
Solyc03g031460.1.1	Tomato	plastid	35.91	37.99
PGSC0003DMT400012953	Potato	cytosol	35.91	37.99
HORVU6Hr1G019320.1	Barley	plastid	43.89	37.93
KRH41973	Soybean	nucleus	35.91	37.8
Zm00001d012606_P001	Maize	mitochondrion	42.64	37.75
KRH49916	Soybean	cytosol	36.66	36.75
PGSC0003DMT400055888	Potato	mitochondrion	34.41	36.6
CDY26081	Canola	mitochondrion	35.16	35.61
AT1G55890.1	Thale cress	mitochondrion	35.16	35.43
PGSC0003DMT400055889	Potato	plastid	34.66	35.37
CDY08267	Canola	mitochondrion	34.91	35.26
Bra037096.1-P	Field mustard	mitochondrion	34.91	35.26
AT3G13160.1	Thale cress	mitochondrion	34.16	34.77
Bra039373.1-P	Field mustard	cytosol	23.69	34.67
Solyc02g079830.1.1	Tomato	mitochondrion	34.41	34.5
CDY66550	Canola	mitochondrion	25.44	34.11
EER95222	Sorghum	mitochondrion	41.65	33.87
Solyc02g079820.2.1	Tomato	cytosol, plastid	26.18	33.55
PGSC0003DMT400071165	Potato	extracellular	14.71	33.52
CDY24208	Canola	mitochondrion	32.42	32.99
CDY43367	Canola	mitochondrion	32.17	32.74
CDX82550	Canola	mitochondrion	31.67	32.32
Bra001492.1-P	Field mustard	mitochondrion	31.67	31.75
CDY24210	Canola	plastid	29.68	27.17
CDY43368	Canola	plastid	29.68	27.11
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	17.96	26.28
GSMUA_Achr6P00410_001	Banana	mitochondrion	21.7	24.72
GSMUA_Achr11P...	Banana	cytosol	11.97	24.62
Bra039372.1-P	Field mustard	cytosol, plastid	29.18	24.48
GSMUA_Achr1P01950_001	Banana	mitochondrion	21.95	22.8
AT3G13150.1	Thale cress	plastid	29.93	21.78

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr10G09300_001
EnsemblPlants:GSMUA_Achr10P09300_001	EnsemblPlants:GSMUA_Achr10T09300_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0RGQ6	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000295E55A	SEG:seg	:	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr10G09300_001]

Coordinates

chr10:+:19197634..19198839

Molecular Weight (calculated)

44430.4 Da

IEP (calculated)

8.902

GRAVY (calculated)

-0.135

Length

401 amino acids

Sequence
(BLAST)

001: MSLSFRVRLF VRRFSSSTAT TVVGPSPDPN PRSYTETLAV TINKLSKERD PDKLAAGFIA ASASYRFRCR HRIYEIAVRR LEKAGRLDAV EAILEAQKRF
101: PSDLAREGFA VRLISLYGKA SMATHAATTF RQLPALGTPR SVMSFNALLT AFADSGDVEG LVAAFRDIPA ADTTIVPNLI SYNVLICALC EKGDLDAALG
201: TVDLMERNGI SPDVITCNTL LHWSYEKKEP SEAEKIWALM WKKNIEPNTK SFNTKLRWLV SEGRTAEAAK LVDQLNHVGL QPDAFSFNAL IKGYFQEGNL
301: EEAKRLFSDF AKNQCAPNKG TFEIIIPYLC EAGELDLALK CCYDSMNTRC FVEAAVFQRV VNGLAKSSRM DEATKLVDVG RKNNYSRKSL RIPSANLSLA
401: V

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.