CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDX92649
CDY03427
CDY08946
CDY11029
CDY24845
CDY34302
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	CDX86457	AT3G27960.1	21798944
AT1G55890.1	CDY58518	AT3G27960.1	21798944
AT1G55890.1	CDX92649	AT4G24690.1	21798944
AT1G55890.1	CDY03427	AT4G24690.1	21798944
AT1G55890.1	CDY08946	AT4G24690.1	21798944
AT1G55890.1	CDY11029	AT4G24690.1	21798944
AT1G55890.1	CDY24845	AT4G24690.1	21798944
AT1G55890.1	CDY34302	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08267	Canola	mitochondrion	96.21	95.97
AT1G55890.1	Thale cress	mitochondrion	81.57	81.16
CDY66550	Canola	mitochondrion	51.01	67.56
CDY24208	Canola	mitochondrion	64.65	64.97
CDY43367	Canola	mitochondrion	64.65	64.97
CDX82550	Canola	mitochondrion	63.89	64.38
VIT_00s0271g00080.t01	Wine grape	mitochondrion	47.47	51.79
VIT_00s0274g00040.t01	Wine grape	mitochondrion	48.48	50.26
PGSC0003DMT400012953	Potato	cytosol	46.97	49.08
KRH41973	Soybean	nucleus	46.72	48.56
Solyc03g031460.1.1	Tomato	plastid	46.46	48.55
KRH49916	Soybean	cytosol	47.73	47.25
GSMUA_Achr10P...	Banana	mitochondrion	35.61	35.16
CDY43368	Canola	plastid	38.38	34.62
CDY24210	Canola	plastid	38.13	34.47
HORVU3Hr1G077400.1	Barley	cytosol	32.32	33.42
Os01t0785700-01	Rice	mitochondrion	34.09	31.11
TraesCS3A01G324300.1	Wheat	plastid	33.33	30.56
TraesCS3A01G324200.1	Wheat	plastid	34.09	29.67
TraesCS3B01G353300.1	Wheat	plastid	30.81	29.19
Zm00001d012606_P001	Maize	mitochondrion	33.33	29.14
TraesCS3B01G361800.1	Wheat	plastid	32.07	28.93
TraesCS3D01G325200.1	Wheat	plastid	32.58	28.73
CDY37572	Canola	mitochondrion	28.54	28.39
TraesCS3D01G317700.1	Wheat	plastid	33.84	28.39
CDY38649	Canola	mitochondrion	27.78	28.35
TraesCS3A01G331700.1	Wheat	plastid	30.56	28.34
EES01580	Sorghum	mitochondrion	31.06	28.02
CDY66741	Canola	mitochondrion	29.29	27.68
TraesCS3A01G331600.1	Wheat	plastid	31.82	27.45
CDY67618	Canola	mitochondrion	29.04	27.45
CDY57688	Canola	mitochondrion	26.77	27.11
TraesCS3A01G324500.1	Wheat	plastid	32.32	27.06
EES01579	Sorghum	mitochondrion	29.29	27.04
CDY54310	Canola	mitochondrion	26.52	26.85
CDY35471	Canola	mitochondrion	27.27	26.54
CDY24774	Canola	mitochondrion	27.27	26.54
HORVU6Hr1G019320.1	Barley	plastid	31.06	26.51
CDY25328	Canola	mitochondrion, plastid	27.27	26.47
HORVU3Hr1G077440.2	Barley	mitochondrion	32.58	26.27
CDY47165	Canola	mitochondrion	26.52	25.74
TraesCS3B01G353500.1	Wheat	plastid	32.32	25.45
TraesCS3D01G317800.1	Wheat	plastid	32.32	25.45
CDX97972	Canola	cytosol	17.68	25.09
EER95222	Sorghum	mitochondrion	31.06	24.95
CDY49792	Canola	plastid	24.75	24.02
CDY07260	Canola	cytosol	9.09	23.53

Protein Annotations

EnsemblPlants:CDY26081	EnsemblPlantsGene:GSBRNA2T00034698001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY26081	ProteinID:CDY26081.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EC76E4	UniProt:A0A078GL94	MapMan:35.1	:	:

Description

BnaC06g11150DBnaC06g11150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL94]

Coordinates

chrLK032185:-:82770..83960

Molecular Weight (calculated)

44368.7 Da

IEP (calculated)

8.932

GRAVY (calculated)

-0.226

Length

396 amino acids

Sequence
(BLAST)

001: MSLLSRLLRG AFFNTCTIRR FSSAASSETT AAISPPTKKS LSSIVNDERN PKRIVEKFKM ACESERFRAN IAVYDRTVRR LVAAKRLHFV EEILEEQKKY
101: PDMSKEGFAA RIISLYGKAG LVENAQKVFD EMPERKCKRS VLSFNALLSA YGVSKRFDVV EQLFNDLPDK LSIKPDIVSY NTLIKALCEK GSLSEAVALL
201: GDIENKGGLK PDIITFNTLL LSSYLKGEFE QGEEIWAKMA EKNVARDIRS YNARLLGLAA KSEELVSLFE ELKASGIKPD VYSFNAMIRG SINQGKMEAA
301: KTWYEEIVKQ GYRPDKATLA LLIPALCKAE DFGCAIELCK ETFSKRYLVG QTTLQELVNE LVKGGKRGEA EEIVEIAKNN DFLKFKLDLS SSQLIS

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.