CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97972	Canola	cytosol	62.75	91.76
AT1G11630.1	Thale cress	mitochondrion	73.28	73.83
CDY25328	Canola	mitochondrion, plastid	62.75	62.75
CDY47165	Canola	mitochondrion	62.5	62.5
CDY07260	Canola	cytosol	21.08	56.21
GSMUA_Achr11P...	Banana	cytosol	25.0	52.31
VIT_10s0116g00030.t01	Wine grape	plastid	50.0	51.52
KRH11411	Soybean	nucleus	46.57	48.97
Solyc10g005280.1.1	Tomato	mitochondrion	47.79	48.51
PGSC0003DMT400029367	Potato	mitochondrion	47.3	48.01
VIT_10s0116g00090.t01	Wine grape	mitochondrion	29.66	47.45
KRH20872	Soybean	mitochondrion	20.1	46.59
GSMUA_Achr6P00410_001	Banana	mitochondrion	38.73	44.89
Os01t0793200-01	Rice	mitochondrion	40.44	42.31
TraesCS3A01G326500.1	Wheat	mitochondrion	39.95	41.79
TraesCS3D01G319900.1	Wheat	mitochondrion	34.31	41.42
TraesCS3B01G355800.1	Wheat	mitochondrion	39.46	41.28
EES01589	Sorghum	mitochondrion	39.22	40.82
Zm00001d043225_P001	Maize	mitochondrion	39.22	40.71
HORVU3Hr1G077780.1	Barley	mitochondrion	38.24	40.0
KRH20873	Soybean	cytosol, mitochondrion	12.01	38.58
CDY57688	Canola	mitochondrion	27.7	28.9
CDY54310	Canola	mitochondrion	27.45	28.64
CDY24774	Canola	mitochondrion	27.94	28.01
CDY35471	Canola	mitochondrion	27.7	27.76
CDY38649	Canola	mitochondrion	26.23	27.58
CDY67618	Canola	mitochondrion	27.94	27.21
CDY37572	Canola	mitochondrion	25.98	26.63
CDY66741	Canola	mitochondrion	27.21	26.49
HORVU5Hr1G041750.1	Barley	cytosol	23.04	26.48
CDY66550	Canola	mitochondrion	18.63	25.42
CDY08267	Canola	mitochondrion	24.26	24.94
CDY26081	Canola	mitochondrion	24.02	24.75
CDX82550	Canola	mitochondrion	23.77	24.68
CDY43367	Canola	mitochondrion	23.53	24.37
CDY24208	Canola	mitochondrion	23.53	24.37
CDY43368	Canola	plastid	25.0	23.23
CDY24210	Canola	plastid	24.75	23.06

Protein Annotations

EnsemblPlants:CDY49792	EnsemblPlantsGene:GSBRNA2T00093812001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF579	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY49792	ProteinID:CDY49792.1	TIGRFAMs:TIGR00756
UniParc:UPI0004EF2B06	UniProt:A0A078IIN5	MapMan:17.7.1.3.2	:	:	:

Description

BnaCnng18050DBnaCnng18050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIN5]

Coordinates

chrLK032859:-:44124..45536

Molecular Weight (calculated)

46465.1 Da

IEP (calculated)

8.878

GRAVY (calculated)

-0.258

Length

408 amino acids

Sequence
(BLAST)

001: MASLFRILTS EPLARNVNQF RLISTASSLL TPDSKASLTS NHHKNTRHVL SLLRTENNPD RILEICRSAS LTPDHHHLHR VAFSVAVATL SRDKHFAAVS
101: HLLDGFIKSQ PNPKSESFAV RVIILYGRAN MLDRSLQTFH DLERYEIQRT VKSLNALLLA CLTARDYEEA KRVYSETPKK YGIEPDLETY NRIIKALCES
201: NSTSSSYSIV AEMERRRVKP RASTFGLMIG GFYKEEKYDE VRRVLRLMRD FGVHVGVATY NVMVRCLCER KRTREAKALL CGVMSSRMRP NSVTYSLLIH
301: GFCSEGDLDE AMSVFEVMVK SGCKPGSECY FDLIRCLCKG GDFETALVLC RESMEKNWVP SFSVMRWLVH GLVGSNKVDE AREVIAHVKD KFSRNVDLWN
401: EVEAELPR

Best Arabidopsis Sequence Match ( AT1G11630.1 )
(BLAST)

001: MAFLFRIRTS EFILQKATQF RLKSSSSSIF TLKSLTSKQK KSRDTLSLLK SENNPDRILE ICRSTSLSPD YHVDRIIFSV AVVTLAREKH FVAVSQLLDG
101: FIQNQPDPKS ESFAVRAIIL YGRANMLDRS IQTFRNLEQY EIPRTVKSLN ALLFACLMAK DYKEANRVYL EMPKMYGIEP DLETYNRMIR VLCESGSTSS
201: SYSIVAEMER KWIKPTAASF GLMIDGFYKE EKFDEVRKVM RMMDEFGVHV GVATYNIMIQ CLCKRKKSAE AKALIDGVMS CRMRPNSVTY SLLIHGFCSE
301: ENLDEAMNLF EVMVCNGYKP DSECYFTLIH CLCKGGDFET ALILCRESME KNWVPSFSVM KWLVNGLASR SKVDEAKELI AVVKEKFTRN VDLWNEVEAA
401: LPLPQ

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g11630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAB4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.