CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDX92649
CDY03427
CDY08946
CDY11029
CDY24845
CDY34302
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	CDX86457	AT3G27960.1	21798944
AT1G55890.1	CDY58518	AT3G27960.1	21798944
AT1G55890.1	CDX92649	AT4G24690.1	21798944
AT1G55890.1	CDY03427	AT4G24690.1	21798944
AT1G55890.1	CDY08946	AT4G24690.1	21798944
AT1G55890.1	CDY11029	AT4G24690.1	21798944
AT1G55890.1	CDY24845	AT4G24690.1	21798944
AT1G55890.1	CDY34302	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037096.1-P	Field mustard	mitochondrion	100.0	100.0
CDY26081	Canola	mitochondrion	95.97	96.21
AT1G55890.1	Thale cress	mitochondrion	80.6	80.4
CDY66550	Canola	mitochondrion	50.63	67.22
CDY43367	Canola	mitochondrion	64.23	64.72
CDY24208	Canola	mitochondrion	63.98	64.47
CDX82550	Canola	mitochondrion	62.97	63.61
VIT_00s0271g00080.t01	Wine grape	mitochondrion	46.85	51.24
VIT_00s0274g00040.t01	Wine grape	mitochondrion	47.86	49.74
PGSC0003DMT400012953	Potato	cytosol	46.85	49.08
KRH41973	Soybean	nucleus	46.6	48.56
Solyc03g031460.1.1	Tomato	plastid	46.35	48.55
KRH49916	Soybean	cytosol	47.61	47.25
GSMUA_Achr10P...	Banana	mitochondrion	35.26	34.91
CDY43368	Canola	plastid	38.54	34.85
CDY24210	Canola	plastid	38.29	34.7
HORVU3Hr1G077400.1	Barley	cytosol	31.99	33.16
Os01t0785700-01	Rice	mitochondrion	34.01	31.11
TraesCS3A01G324300.1	Wheat	plastid	32.75	30.09
Zm00001d012606_P001	Maize	mitochondrion	34.01	29.8
TraesCS3A01G324200.1	Wheat	plastid	33.5	29.23
TraesCS3D01G325200.1	Wheat	plastid	33.0	29.18
TraesCS3B01G361800.1	Wheat	plastid	32.24	29.16
TraesCS3A01G331700.1	Wheat	plastid	31.23	29.04
TraesCS3B01G353300.1	Wheat	plastid	30.23	28.71
EES01580	Sorghum	mitochondrion	31.74	28.7
CDY37572	Canola	mitochondrion	28.46	28.39
TraesCS3D01G317700.1	Wheat	plastid	33.75	28.39
CDY38649	Canola	mitochondrion	27.71	28.35
TraesCS3A01G331600.1	Wheat	plastid	32.24	27.89
CDY66741	Canola	mitochondrion	29.22	27.68
EES01579	Sorghum	mitochondrion	29.72	27.51
CDY67618	Canola	mitochondrion	28.97	27.45
CDY57688	Canola	mitochondrion	26.7	27.11
TraesCS3A01G324500.1	Wheat	plastid	32.24	27.06
CDY54310	Canola	mitochondrion	26.45	26.85
HORVU6Hr1G019320.1	Barley	plastid	31.23	26.72
CDY35471	Canola	mitochondrion	27.2	26.54
CDY24774	Canola	mitochondrion	27.2	26.54
HORVU3Hr1G077440.2	Barley	mitochondrion	32.75	26.48
CDY25328	Canola	mitochondrion, plastid	26.95	26.23
TraesCS3B01G353500.1	Wheat	plastid	32.49	25.65
TraesCS3D01G317800.1	Wheat	plastid	32.49	25.65
CDY47165	Canola	mitochondrion	26.2	25.49
CDX97972	Canola	cytosol	17.88	25.45
EER95222	Sorghum	mitochondrion	31.23	25.15
CDY49792	Canola	plastid	24.94	24.26
CDY07260	Canola	cytosol	9.32	24.18

Protein Annotations

EnsemblPlants:CDY08267	EnsemblPlantsGene:GSBRNA2T00125597001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY08267	ProteinID:CDY08267.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI00025475E7	UniProt:A0A078F574	MapMan:35.1	:	:

Description

BnaA05g13520DBnaA05g13520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F574]

Coordinates

chrLK031984:+:472401..473594

Molecular Weight (calculated)

44557.0 Da

IEP (calculated)

9.554

GRAVY (calculated)

-0.296

Length

397 amino acids

Sequence
(BLAST)

001: MSSLSRLLRG AFNTCTIRRF SSAAASETTA AISPPPKKSL SSIVNEERNP KRIVDKFKMA CESERFRANI AVYDRTVRRL VAAKRLHFVK EILEEQKKYP
101: DMSKEGFAAR IISLYGKAGL VENAQKVFDE MPERNCKRSV LSFNALLSAY GVSKRFDVVE QLFNDLPKKL SIKPDIVSYN TLIKALCEKG SLSEAVALLG
201: DIENKGGLKP DIITFNTLLL SSYLKGEFEQ GEEIWAKMAE KKVARDIRSY NARLLGLANQ TKSEELVSLF EELKASGIKP DVYSFNAMIR GSINKGKREE
301: AKTWYEEIVK QGYRPDKATL ALLIPALCKA EEFGCAIELC KETFSKRYLV GQTTLQELVN ELVKGGKRGE AEEIVEIAKN NDFLKFKLDL SSSQLIS

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.