Factsheet for Bra037096.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010484.1-P
Bra013825.1-P
Bra019212.1-P
Bra025315.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	Bra025315.1-P	AT3G27960.1	21798944
AT1G55890.1	Bra010484.1-P	AT4G24690.1	21798944
AT1G55890.1	Bra013825.1-P	AT4G24690.1	21798944
AT1G55890.1	Bra019212.1-P	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08267	Canola	mitochondrion	100.0	100.0
AT1G55890.1	Thale cress	mitochondrion	80.6	80.4
Bra039373.1-P	Field mustard	cytosol	45.34	65.69
Bra001492.1-P	Field mustard	mitochondrion	64.23	63.75
VIT_00s0271g00080.t01	Wine grape	mitochondrion	46.85	51.24
VIT_00s0274g00040.t01	Wine grape	mitochondrion	47.86	49.74
PGSC0003DMT400012953	Potato	cytosol	46.85	49.08
KRH41973	Soybean	nucleus	46.6	48.56
Solyc03g031460.1.1	Tomato	plastid	46.35	48.55
KRH49916	Soybean	cytosol	47.61	47.25
GSMUA_Achr10P...	Banana	mitochondrion	35.26	34.91
HORVU3Hr1G077400.1	Barley	cytosol	31.99	33.16
Bra039372.1-P	Field mustard	cytosol, plastid	37.78	31.38
Os01t0785700-01	Rice	mitochondrion	34.01	31.11
TraesCS3A01G324300.1	Wheat	plastid	32.75	30.09
Zm00001d012606_P001	Maize	mitochondrion	34.01	29.8
TraesCS3A01G324200.1	Wheat	plastid	33.5	29.23
TraesCS3D01G325200.1	Wheat	plastid	33.0	29.18
TraesCS3B01G361800.1	Wheat	plastid	32.24	29.16
TraesCS3A01G331700.1	Wheat	plastid	31.23	29.04
TraesCS3B01G353300.1	Wheat	plastid	30.23	28.71
EES01580	Sorghum	mitochondrion	31.74	28.7
Bra008492.1-P	Field mustard	mitochondrion	28.21	28.57
TraesCS3D01G317700.1	Wheat	plastid	33.75	28.39
Bra037216.1-P	Field mustard	mitochondrion	29.47	27.92
TraesCS3A01G331600.1	Wheat	plastid	32.24	27.89
EES01579	Sorghum	mitochondrion	29.72	27.51
TraesCS3A01G324500.1	Wheat	plastid	32.24	27.06
Bra003553.1-P	Field mustard	mitochondrion	26.45	26.85
HORVU6Hr1G019320.1	Barley	plastid	31.23	26.72
Bra010568.1-P	Field mustard	mitochondrion	27.2	26.54
HORVU3Hr1G077440.2	Barley	mitochondrion	32.75	26.48
Bra028380.1-P	Field mustard	mitochondrion	26.7	25.98
TraesCS3B01G353500.1	Wheat	plastid	32.49	25.65
TraesCS3D01G317800.1	Wheat	plastid	32.49	25.65
Bra019842.1-P	Field mustard	cytosol	17.88	25.45
EER95222	Sorghum	mitochondrion	31.23	25.15

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra037096	EnsemblPlants:Bra037096.1	EnsemblPlants:Bra037096.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4F7N5	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00025475E7	SEG:seg	:	:	:	:

Description

AT1G55890 (E=1e-166) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA05:-:10032628..10033821

Molecular Weight (calculated)

44557.0 Da

IEP (calculated)

9.554

GRAVY (calculated)

-0.296

Length

397 amino acids

Sequence
(BLAST)

001: MSSLSRLLRG AFNTCTIRRF SSAAASETTA AISPPPKKSL SSIVNEERNP KRIVDKFKMA CESERFRANI AVYDRTVRRL VAAKRLHFVK EILEEQKKYP
101: DMSKEGFAAR IISLYGKAGL VENAQKVFDE MPERNCKRSV LSFNALLSAY GVSKRFDVVE QLFNDLPKKL SIKPDIVSYN TLIKALCEKG SLSEAVALLG
201: DIENKGGLKP DIITFNTLLL SSYLKGEFEQ GEEIWAKMAE KKVARDIRSY NARLLGLANQ TKSEELVSLF EELKASGIKP DVYSFNAMIR GSINKGKREE
301: AKTWYEEIVK QGYRPDKATL ALLIPALCKA EEFGCAIELC KETFSKRYLV GQTTLQELVN ELVKGGKRGE AEEIVEIAKN NDFLKFKLDL SSSQLIS

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.