Factsheet for Bra028380.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47165	Canola	mitochondrion	99.26	99.26
AT1G61870.1	Thale cress	mitochondrion	88.48	88.48
CDY07260	Canola	cytosol	32.84	87.58
VIT_10s0116g00030.t01	Wine grape	plastid	62.01	63.89
Bra019842.1-P	Field mustard	cytosol	42.65	62.37
KRH11411	Soybean	nucleus	55.88	58.76
Solyc10g005280.1.1	Tomato	mitochondrion	57.6	58.46
PGSC0003DMT400029367	Potato	mitochondrion	57.11	57.96
GSMUA_Achr11P...	Banana	cytosol	27.45	57.44
VIT_10s0116g00090.t01	Wine grape	mitochondrion	35.78	57.25
GSMUA_Achr6P00410_001	Banana	mitochondrion	46.08	53.41
KRH20872	Soybean	mitochondrion	23.04	53.41
Os01t0793200-01	Rice	mitochondrion	46.08	48.21
KRH20873	Soybean	cytosol, mitochondrion	14.71	47.24
EES01589	Sorghum	mitochondrion	45.1	46.94
TraesCS3A01G326500.1	Wheat	mitochondrion	44.85	46.92
Zm00001d043225_P001	Maize	mitochondrion	45.1	46.82
TraesCS3B01G355800.1	Wheat	mitochondrion	44.36	46.41
TraesCS3D01G319900.1	Wheat	mitochondrion	37.75	45.56
HORVU3Hr1G077780.1	Barley	mitochondrion	43.38	45.38
HORVU5Hr1G041750.1	Barley	cytosol	26.23	30.14
Bra039373.1-P	Field mustard	cytosol	19.85	29.56
Bra010568.1-P	Field mustard	mitochondrion	28.19	28.26
Bra003553.1-P	Field mustard	mitochondrion	26.96	28.13
Bra008492.1-P	Field mustard	mitochondrion	26.96	28.06
Bra001492.1-P	Field mustard	mitochondrion	26.47	27.0
Bra037096.1-P	Field mustard	mitochondrion	25.98	26.7
Bra037216.1-P	Field mustard	mitochondrion	27.21	26.49
Bra039372.1-P	Field mustard	cytosol, plastid	25.25	21.55

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.2	EnsemblPlantsGene:Bra028380	EnsemblPlants:Bra028380.1	EnsemblPlants:Bra028380.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0016020	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4EHW5	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00025453D7	SEG:seg	:	:

Description

AT1G61870 (E=8e-194) PPR336 | PPR336 (pentatricopeptide repeat 336)

Coordinates

chrA01:-:17937251..17938477

Molecular Weight (calculated)

45588.3 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.254

Length

408 amino acids

Sequence
(BLAST)

001: MALLTRIRSS ASLLRHLNPS PQIRSLSSAS SILSPDSKTP LTSKQKSKTA LSLLKTEKDP DRILEICRAA SLTPDCHIDR LAFSAAVQNL TENKHFSAVT
101: NLLDGLLENR PDLKTERFAA HAIVLYAQAN MLDHSLRVFS DLEKLEIQRT VKSLNALLFA CLVAKDYKEA KRVYIEIPKM YKIEPDLETY DRMIKVFCES
201: GSSSSSYSIV AEMERKGIKP TSSTFGLMIA GFYREDKKED VGKVLAMMKE RGVSIGVSTH NIRIQSLCKR KRSGEAKALL DGMLSSGMKP NAVTYGHLIH
301: GFCNEGEFDE AKKLFKAMVN RGCKPDSECY FTLVYYLCKG GDFEAALSLC KESMEKNWVP SFGIMKSLVN GLAKDSKVEE AKELIAQVKE KFTRNVELWN
401: EVEAALPQ

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.