CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g00090.t01	Wine grape	mitochondrion	59.66	41.18
KRH11411	Soybean	nucleus	82.95	37.63
VIT_10s0116g00030.t01	Wine grape	plastid	59.66	26.52
PGSC0003DMT400029367	Potato	mitochondrion	56.25	24.63
Solyc10g005280.1.1	Tomato	mitochondrion	55.68	24.38
Bra028380.1-P	Field mustard	mitochondrion	53.41	23.04
CDY25328	Canola	mitochondrion, plastid	53.41	23.04
AT1G61870.1	Thale cress	mitochondrion	52.84	22.79
CDY47165	Canola	mitochondrion	52.84	22.79
TraesCS3D01G319900.1	Wheat	mitochondrion	43.75	22.78
AT1G11630.1	Thale cress	mitochondrion	47.73	20.74
Os01t0793200-01	Rice	mitochondrion	44.89	20.26
HORVU3Hr1G077780.1	Barley	mitochondrion	44.89	20.26
CDY49792	Canola	plastid	46.59	20.1
GSMUA_Achr6P00410_001	Banana	mitochondrion	39.77	19.89
TraesCS3B01G355800.1	Wheat	mitochondrion	43.75	19.74
TraesCS3A01G326500.1	Wheat	mitochondrion	43.75	19.74
EES01589	Sorghum	mitochondrion	42.05	18.88
Zm00001d043225_P001	Maize	mitochondrion	40.91	18.32
HORVU5Hr1G041750.1	Barley	cytosol	30.68	15.21
KRH41973	Soybean	nucleus	28.41	13.12
KRH49916	Soybean	cytosol	28.98	12.75
CDX97972	Canola	cytosol	19.89	12.54
Bra019842.1-P	Field mustard	cytosol	19.89	12.54
KRH20873	Soybean	cytosol, mitochondrion	0.0	0.0
GSMUA_Achr11P...	Banana	cytosol	0.0	0.0
CDY07260	Canola	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02008323	EnsemblPlants:KRH20872	EnsemblPlantsGene:GLYMA_13G206000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF579	PFAM:PF13812	ProteinID:KRH20872	ProteinID:KRH20872.1	UniParc:UPI0006EE13D8	UniProt:A0A0R0GZS0
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:32002491..32003259

Molecular Weight (calculated)

19836.0 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.122

Length

176 amino acids

Sequence
(BLAST)

001: MVARLTPDQK VACSIHQKTR SALHLLKSET KSERILDICR AAALTPDFHL DRRAFSLVVS KLAAAHNFPS IRTLVDDLKT RPDLCRNEKF LSHAIVLYGQ
101: ANMLDHAIRT FAEDLPSPRS VKTLNSLLFA SLLAKNYKEL TRIYLEFPKT YSIQPNLDTY NIVIKAFAQS GSTSSF

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.