CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20872	Soybean	mitochondrion	37.63	82.95
KRH20873	Soybean	cytosol, mitochondrion	22.42	68.5
VIT_10s0116g00030.t01	Wine grape	plastid	64.69	63.38
VIT_10s0116g00090.t01	Wine grape	mitochondrion	38.92	59.22
PGSC0003DMT400029367	Potato	mitochondrion	60.31	58.21
Solyc10g005280.1.1	Tomato	mitochondrion	60.05	57.96
Bra028380.1-P	Field mustard	mitochondrion	58.76	55.88
CDY47165	Canola	mitochondrion	58.51	55.64
AT1G61870.1	Thale cress	mitochondrion	58.25	55.39
CDY25328	Canola	mitochondrion, plastid	58.25	55.39
GSMUA_Achr6P00410_001	Banana	mitochondrion	49.23	54.26
CDY07260	Canola	cytosol	21.13	53.59
GSMUA_Achr11P...	Banana	cytosol	26.55	52.82
EES01589	Sorghum	mitochondrion	50.77	50.26
Os01t0793200-01	Rice	mitochondrion	50.26	50.0
AT1G11630.1	Thale cress	mitochondrion	52.06	49.88
TraesCS3A01G326500.1	Wheat	mitochondrion	49.23	48.97
TraesCS3B01G355800.1	Wheat	mitochondrion	48.71	48.46
HORVU3Hr1G077780.1	Barley	mitochondrion	48.45	48.21
Zm00001d043225_P001	Maize	mitochondrion	48.71	48.09
TraesCS3D01G319900.1	Wheat	mitochondrion	41.49	47.63
CDX97972	Canola	cytosol	34.02	47.31
Bra019842.1-P	Field mustard	cytosol	34.02	47.31
CDY49792	Canola	plastid	48.97	46.57
HORVU5Hr1G041750.1	Barley	cytosol	31.19	34.08
KRH41973	Soybean	nucleus	28.61	29.13
KRH49916	Soybean	cytosol	29.64	28.75

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100793100	MapMan:17.7.1.3.2	EMBL:ACUP02009209	EnsemblPlantsGene:GLYMA_15G106500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	UniProt:I1MFG1	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH11411	ProteinID:KRH11411
ProteinID:KRH11411.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF579	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233B441	:

Description

hypothetical protein

Coordinates

chr15:-:8356636..8358583

Molecular Weight (calculated)

43484.4 Da

IEP (calculated)

9.130

GRAVY (calculated)

-0.266

Length

388 amino acids

Sequence
(BLAST)

001: MSIFSRLRHY STTSILSPNS STPLTSKQKT RSAIHLLKSE TNPERILDIC RAAALTPDSH IDRRAFSLAV SKLAAAHHFA GIRTFLDDLK TRPDLRNEKF
101: LSHAIVLYGQ ANMLDHAIRT FTEDLPSPRS VKTLNSLLFA ALLAKNYKEL TRIYLEFPKT YSIQPNLDTY NTVIKAFAES GSTSSVYSVL AEMDKNNIAP
201: NVTTLNNSLS GFYREKKFDD VGKVLKLMEK YSVFPSISTY NVRIQSLCKL KRSSEAKALL EGMVCNGRKP NSVSYACLIH GFCKEGDLEE AKRLFRDMKR
301: RGYLPDGECY FTLVHFLCCG GEFEAALEVA KECMGKGWVP NFTTMKSLVN GLAGALKVDE AKEVIKQIKE KFAESGDKWD EIEAGLPQ

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.