Factsheet for GSMUA_Achr6P00410_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	35.23	63.59
Os01t0793200-01	Rice	mitochondrion	60.51	54.62
CDY07260	Canola	cytosol	23.58	54.25
TraesCS3B01G355800.1	Wheat	mitochondrion	59.38	53.59
TraesCS3A01G326500.1	Wheat	mitochondrion	59.38	53.59
EES01589	Sorghum	mitochondrion	59.66	53.57
HORVU3Hr1G077780.1	Barley	mitochondrion	58.81	53.08
Zm00001d043225_P001	Maize	mitochondrion	59.09	52.93
TraesCS3D01G319900.1	Wheat	mitochondrion	50.0	52.07
VIT_10s0116g00030.t01	Wine grape	plastid	57.67	51.26
KRH11411	Soybean	nucleus	54.26	49.23
Solyc10g005280.1.1	Tomato	mitochondrion	54.26	47.51
PGSC0003DMT400029367	Potato	mitochondrion	53.98	47.26
AT1G61870.1	Thale cress	mitochondrion	54.26	46.81
CDY47165	Canola	mitochondrion	53.41	46.08
Bra028380.1-P	Field mustard	mitochondrion	53.41	46.08
CDY25328	Canola	mitochondrion, plastid	52.84	45.59
VIT_10s0116g00090.t01	Wine grape	mitochondrion	32.39	44.71
CDX97972	Canola	cytosol	35.23	44.44
Bra019842.1-P	Field mustard	cytosol	35.23	44.44
AT1G11630.1	Thale cress	mitochondrion	48.3	41.98
KRH20873	Soybean	cytosol, mitochondrion	15.06	41.73
KRH20872	Soybean	mitochondrion	19.89	39.77
CDY49792	Canola	plastid	44.89	38.73
HORVU5Hr1G041750.1	Barley	cytosol	36.65	36.34
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	23.3	29.93
GSMUA_Achr1P01950_001	Banana	mitochondrion	28.69	26.17
GSMUA_Achr10P...	Banana	mitochondrion	24.72	21.7

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G00410_001
EnsemblPlants:GSMUA_Achr6P00410_001	EnsemblPlants:GSMUA_Achr6T00410_001	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0T2Y9	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002949168	SEG:seg	:	:

Description

Putative Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr6G00410_001]

Coordinates

chr6:-:291984..293162

Molecular Weight (calculated)

39393.5 Da

IEP (calculated)

8.808

GRAVY (calculated)

-0.247

Length

352 amino acids

Sequence
(BLAST)

001: MAAVAAARNR LLNHLRYRSF SSASAILNPS DPSAVLTSKQ KSRAALALLK SETDPSRIID ICRAAALSPS SSHLDRAGML EDAIRTFRGS NSSSVRTLNA
101: LLFACILAGR HDEVGRIFRE FPGTHGIASN VETYNTVVKA FCESGTSRSF YSVLDEMCRA GIKPNMTTFC TALAGFYKEE RFDDVDKVLE LMKKHDCHPG
201: LSAYNVRIQS LCKLKRPGDA KALFKEMMTK GMKPNWVTFN HLIFGFCKQG DLEEAKKFYR QMRGRGCVPD SSCYFTFIYY LCEGGDFEAA LSVCKETMAK
301: NWVPCFSTMK MLVKGLLSNS KVEEAREIME RVKEKFSGNS DMWKEVEEAL PQ

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.