Factsheet for GSMUA_Achr1P01950_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090439	Potato	plastid	45.34	43.1
Bra037216.1-P	Field mustard	mitochondrion	45.6	42.0
CDY67618	Canola	mitochondrion	45.34	41.77
CDY66741	Canola	mitochondrion	44.82	41.29
VIT_04s0023g01460.t01	Wine grape	mitochondrion	43.78	40.82
Solyc02g062910.1.1	Tomato	plastid	43.78	40.62
AT2G18520.1	Thale cress	mitochondrion	43.52	40.19
PGSC0003DMT400039992	Potato	cytosol	42.49	39.9
CDY24774	Canola	mitochondrion	41.71	39.56
Bra010568.1-P	Field mustard	mitochondrion	41.45	39.31
AT4G36680.1	Thale cress	mitochondrion	41.71	39.08
CDY35471	Canola	mitochondrion	41.19	39.07
Zm00001d017317_P001	Maize	mitochondrion	47.15	38.64
Os02t0633200-01	Rice	mitochondrion	45.08	38.24
Solyc02g085550.1.1	Tomato	plastid	23.83	37.55
EES05467	Sorghum	mitochondrion	45.34	37.39
TraesCS6D01G214000.1	Wheat	mitochondrion	43.01	35.93
TraesCS6A01G221200.1	Wheat	mitochondrion	42.75	35.71
TraesCS6B01G260000.1	Wheat	mitochondrion	41.97	35.06
HORVU6Hr1G059290.1	Barley	cytosol	43.26	34.72
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	34.2	34.11
GSMUA_Achr11P...	Banana	cytosol	15.29	30.26
GSMUA_Achr6P00410_001	Banana	mitochondrion	26.17	28.69
Solyc02g085650.2.1	Tomato	plastid	45.34	27.09
GSMUA_Achr10P...	Banana	mitochondrion	22.8	21.95
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	15.54	21.9

Protein Annotations

EnsemblPlants:GSMUA_Achr1P01950_001	EnsemblPlants:GSMUA_Achr1T01950_001	EnsemblPlantsGene:GSMUA_Achr1G01950_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF506	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0002968DDC	UniProt:M0RWA3	MapMan:35.1	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At2g18520, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr1G01950_001]

Coordinates

chr1:-:1590984..1592207

Molecular Weight (calculated)

42555.4 Da

IEP (calculated)

8.056

GRAVY (calculated)

-0.156

Length

386 amino acids

Sequence
(BLAST)

001: MGDLSAARRH LSLLGCLPRR LSTTAPATRT GISAAVAKSR LQKEFDPDRA VTILSSVADS TSARYALELT VRRLARSRRF SDVEALLEYR MSAAAGLTEH
101: YVATVILSYG TAGMLDHALR TFDEVPVLIS APHSLVSFNA FLSACIRAKK PNRVPGLFAE LSEKHAITPD VTLKEMVTVK HLEPTTVIYT TLLDSLYKKG
201: KSDEAEALWK EMVGNGCAPD LTAYNVRVMH RAGQGKPEDV LELIGEIEAA GIKPDTITYT YLLTCHCNAG QFEEAKAVYR GLREKGCRPN ATMFKIYLSR
301: LCENGDVDTG LEVFEDSLKS NKVPGFRTMK LLVEGLVKGT KLEEAKAVVD KVKKRFPENL VGGWNKVEKE LGLSADEQVW DQLEVF

Best Arabidopsis Sequence Match ( AT2G18520.1 )
(BLAST)

001: MTSSRLYLRF LRRFSTATGI DSQTTAYPGA ITMSKAKSKL RKVQDPDKAL AIYKSVSNNS TSPLSSRYAM ELTVQRLAKS QRFSDIEALI ESHKNNPKIK
101: TETFLSTLIR SYGRASMFDH AMKMFEEMDK LGTPRTVVSF NALLAACLHS DLFERVPQLF DEFPQRYNNI TPDKISYGML IKSYCDSGKP EKAMEIMRDM
201: EVKGVEVTII AFTTILGSLY KNGLVDEAES LWIEMVNKGC DLDNTVYNVR LMNAAKESPE RVKELMEEMS SVGLKPDTVS YNYLMTAYCV KGMMSEAKKV
301: YEGLEQPNAA TFRTLIFHLC INGLYDQGLT VFKKSAIVHK IPDFKTCKHL TEGLVKNNRM EDARGVARIV KKKFPPRLVT EWKKLEEKLG LYSKGNAAAV
401: SSSSQTREVL DQEREDDV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18520, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU67]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.