Factsheet for PGSC0003DMT400039992

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36680.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT4G36680.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT4G36680.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT4G36680.1	PGSC0003DMT400069515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062910.1.1	Tomato	plastid	92.7	91.59
PGSC0003DMT400090439	Potato	plastid	76.16	77.09
VIT_04s0023g01460.t01	Wine grape	mitochondrion	63.26	62.8
AT4G36680.1	Thale cress	mitochondrion	56.69	56.55
CDY24774	Canola	mitochondrion	55.23	55.77
Bra010568.1-P	Field mustard	mitochondrion	54.99	55.53
CDY35471	Canola	mitochondrion	54.5	55.04
AT2G18520.1	Thale cress	mitochondrion	53.53	52.63
Bra037216.1-P	Field mustard	mitochondrion	52.55	51.55
CDY67618	Canola	mitochondrion	52.55	51.55
CDY66741	Canola	mitochondrion	51.82	50.84
GSMUA_Achr1P01950_001	Banana	mitochondrion	39.9	42.49
Os02t0633200-01	Rice	mitochondrion	35.28	31.87
Zm00001d017317_P001	Maize	mitochondrion	35.77	31.21
TraesCS6A01G221200.1	Wheat	mitochondrion	35.04	31.17
TraesCS6B01G260000.1	Wheat	mitochondrion	35.04	31.17
TraesCS6D01G214000.1	Wheat	mitochondrion	35.04	31.17
EES05467	Sorghum	mitochondrion	35.04	30.77
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	28.71	30.49
HORVU6Hr1G059290.1	Barley	cytosol	35.04	29.94
PGSC0003DMT400012953	Potato	cytosol	27.01	29.29
PGSC0003DMT400072924	Potato	mitochondrion	27.49	27.9
PGSC0003DMT400029367	Potato	mitochondrion	26.76	27.36
PGSC0003DMT400055888	Potato	mitochondrion	23.36	25.46
PGSC0003DMT400071165	Potato	extracellular	10.71	25.0
PGSC0003DMT400055889	Potato	plastid	23.36	24.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400039992	EnsemblPlantsGene:PGSC0003DMG400015467	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF506
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400015467	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI00029681DB	UniProt:M1B941	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400015467]

Coordinates

chr2:-:21430864..21435169

Molecular Weight (calculated)

45891.0 Da

IEP (calculated)

8.341

GRAVY (calculated)

-0.457

Length

411 amino acids

Sequence
(BLAST)

001: MNKEKQEDKE KTAAAAATTA TAAASSTSGA TISISKAKSK LKSEHDPDKA LKIYSSVSNH YTSPLSSRYA QEYTVKRLAK SHRFSDIEAF LESHKDDKKI
101: TQEPFLSSII RSYGLAGMFD QALKTYLQMD DLGTPRSAVS FNVLLSACVN SKLYDRVPQL FDEMPKKHGF LPDKVSYGVL IRSYCEMGKP ELAMEKLKEM
201: EEKGVEITAV TFTTILHSLY KGGRCDEAEK VWNEMVKRGC GPDVGAYNVK IMNIQGGDPE GVKGLIEEMS NVGLKPDTIS YNYLMSCYCR NGMMDEAEKV
301: YEDLETKGCN PNASTFRTLI FYLCKNELFE TGYKIFGESV RANKIPDVNT LKYLVHGLAK SSKAKEAKEM IRTMKKKFPA NVVKVWTKLE DELGLARVDV
401: SDIKSNETNV A

Best Arabidopsis Sequence Match ( AT4G36680.1 )
(BLAST)

001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M065]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.