Factsheet for PGSC0003DMT400090439

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36680.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT4G36680.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT4G36680.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT4G36680.1	PGSC0003DMT400069515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085550.1.1	Tomato	plastid	50.99	84.49
PGSC0003DMT400039992	Potato	cytosol	77.09	76.16
VIT_04s0023g01460.t01	Wine grape	mitochondrion	66.75	65.46
Solyc02g085650.2.1	Tomato	plastid	94.33	59.29
AT4G36680.1	Thale cress	mitochondrion	59.85	58.98
CDY24774	Canola	mitochondrion	57.64	57.49
Bra010568.1-P	Field mustard	mitochondrion	57.39	57.25
CDY35471	Canola	mitochondrion	56.65	56.51
AT2G18520.1	Thale cress	mitochondrion	57.88	56.22
Bra037216.1-P	Field mustard	mitochondrion	55.66	53.94
CDY67618	Canola	mitochondrion	55.66	53.94
CDY66741	Canola	mitochondrion	54.68	52.98
GSMUA_Achr1P01950_001	Banana	mitochondrion	43.1	45.34
Os02t0633200-01	Rice	mitochondrion	37.68	33.63
Zm00001d017317_P001	Maize	mitochondrion	38.67	33.33
TraesCS6A01G221200.1	Wheat	mitochondrion	37.68	33.12
TraesCS6B01G260000.1	Wheat	mitochondrion	37.44	32.9
TraesCS6D01G214000.1	Wheat	mitochondrion	37.44	32.9
HORVU6Hr1G059290.1	Barley	cytosol	37.93	32.02
EES05467	Sorghum	mitochondrion	36.7	31.84
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	30.3	31.78
PGSC0003DMT400012953	Potato	cytosol	29.56	31.66
PGSC0003DMT400072924	Potato	mitochondrion	29.31	29.38
PGSC0003DMT400029367	Potato	mitochondrion	27.83	28.11
PGSC0003DMT400055889	Potato	plastid	26.35	27.23
PGSC0003DMT400055888	Potato	mitochondrion	24.38	26.26
PGSC0003DMT400071165	Potato	extracellular	10.59	24.43

Protein Annotations

EnsemblPlants:PGSC0003DMT400090439	EnsemblPlantsGene:PGSC0003DMG400040010	EntrezGene:102586023	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF506	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG400040010	RefSeq:XP_006363148.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002953B0D	UniProt:M1DKE1	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400040010]

Coordinates

chr2:-:40774203..40775423

Molecular Weight (calculated)

45787.1 Da

IEP (calculated)

9.000

GRAVY (calculated)

-0.401

Length

406 amino acids

Sequence
(BLAST)

001: MSSSIALRQA RHLTTTAAAV AAASSTSTFA TISISKAKSK LKAEHDPDKA LEIYSSVSDR YVSPLSSRYA QEFTVKRLAK SHRFSDIENF LESHKNSPKI
101: TQEPFLSSII RSYGVAGMFD HALKIYHQMD DLGTPRSAIS FNVLLSACVR SKLYDRVPQL FDEIPVKYGF LPDKVSYGIL IRSYCEMGSP EMAMERLKEM
201: EEKGVEITTV TFTTILHSFY KKGKSDEAEK VWNEMVNRGC GPDVGAYNVK IMNIQGGDPE GVKALIEEMS DAGLKPDTIS YNYLMTCYCR NELMDEAQKV
301: YDDLEKNRCN PNAATFKTLI FYLCKKGRFE TGYKVFKESV KVQKIPDFNT LKYLVEGLVK KSMLKDAKGM SRTVKKKFPP NLVKDWTKLE EELGLAKAEA
401: PDNRVQ

Best Arabidopsis Sequence Match ( AT4G36680.1 )
(BLAST)

001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M065]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.