Factsheet for TraesCS6A01G233500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G260000.1	Wheat	mitochondrion	98.71	82.68
TraesCS6A01G221200.1	Wheat	mitochondrion	97.16	81.39
HORVU6Hr1G059290.1	Barley	cytosol	93.28	75.05
Os02t0633200-01	Rice	mitochondrion	70.03	59.56
Zm00001d017317_P001	Maize	mitochondrion	69.51	57.11
EES05467	Sorghum	mitochondrion	67.18	55.56
GSMUA_Achr1P01950_001	Banana	mitochondrion	34.11	34.2
CDY35471	Canola	mitochondrion	32.3	30.71
VIT_04s0023g01460.t01	Wine grape	mitochondrion	32.82	30.68
Bra010568.1-P	Field mustard	mitochondrion	32.04	30.47
CDY24774	Canola	mitochondrion	32.04	30.47
PGSC0003DMT400090439	Potato	plastid	31.78	30.3
AT4G36680.1	Thale cress	mitochondrion	31.78	29.85
AT2G18520.1	Thale cress	mitochondrion	32.04	29.67
Bra037216.1-P	Field mustard	mitochondrion	32.04	29.59
CDY67618	Canola	mitochondrion	31.78	29.36
Solyc02g062910.1.1	Tomato	plastid	31.52	29.33
CDY66741	Canola	mitochondrion	31.52	29.12
PGSC0003DMT400039992	Potato	cytosol	30.49	28.71
Solyc02g085550.1.1	Tomato	plastid	17.05	26.94
TraesCS3A01G326500.1	Wheat	mitochondrion	22.74	22.56
Solyc02g085650.2.1	Tomato	plastid	34.88	20.9
TraesCS3A01G324200.1	Wheat	plastid	24.03	20.44
TraesCS3A01G324500.1	Wheat	plastid	24.55	20.08
TraesCS3A01G324300.1	Wheat	plastid	21.96	19.68
TraesCS1A01G160400.1	Wheat	cytosol	10.85	19.18
TraesCS3A01G331700.1	Wheat	plastid	20.93	18.97
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	20.93	18.08
TraesCS3A01G331600.1	Wheat	plastid	21.19	17.86

Protein Annotations

EnsemblPlants:TraesCS6A01G233500.1	EnsemblPlantsGene:TraesCS6A01G233500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1042
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6A:+:441435375..441437160

Molecular Weight (calculated)

42113.9 Da

IEP (calculated)

6.063

GRAVY (calculated)

-0.374

Length

387 amino acids

Sequence
(BLAST)

001: MAALASLLRR RSSRRADYDA DRAVSLLEAI DTASLSAGST RHALSLAARR LTRAGRHADA EALLSSHIPA SPTEPHLSAI LCSYASAGLP EKALEAFRSA
101: APSLPSPISP MPFNALLSAF VRCCRHRRVP VKEFSITPNA TSYAILVKAH CMVRHDAKAH EVIARMREEG ISPTTTIYTT MIDSMYKQKK VEEAQTLWKQ
201: MLESGCKPDH ATYNVKAMHH GLNGKPEGVL QVMVEMEADG VKPDTITYNF LMTAYCKDGK MEDAKALYRS LGDKGCSANA ATYKHMLAAL EAKEVIYVVT
301: KKFPDTMLSG WKKLEKELGF CSDSGDTTPH AECTAEEPVS ESEPATTEAL ELKDSAAEET GVSEEYDGDE TPSPETSTDE EVPRGPA

Best Arabidopsis Sequence Match ( AT2G18520.1 )
(BLAST)

001: MTSSRLYLRF LRRFSTATGI DSQTTAYPGA ITMSKAKSKL RKVQDPDKAL AIYKSVSNNS TSPLSSRYAM ELTVQRLAKS QRFSDIEALI ESHKNNPKIK
101: TETFLSTLIR SYGRASMFDH AMKMFEEMDK LGTPRTVVSF NALLAACLHS DLFERVPQLF DEFPQRYNNI TPDKISYGML IKSYCDSGKP EKAMEIMRDM
201: EVKGVEVTII AFTTILGSLY KNGLVDEAES LWIEMVNKGC DLDNTVYNVR LMNAAKESPE RVKELMEEMS SVGLKPDTVS YNYLMTAYCV KGMMSEAKKV
301: YEGLEQPNAA TFRTLIFHLC INGLYDQGLT VFKKSAIVHK IPDFKTCKHL TEGLVKNNRM EDARGVARIV KKKFPPRLVT EWKKLEEKLG LYSKGNAAAV
401: SSSSQTREVL DQEREDDV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18520, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU67]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.