Factsheet for TraesCS1A01G160400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G176200.1	Wheat	mitochondrion	99.54	51.17
HORVU1Hr1G042520.2	Barley	mitochondrion	96.35	46.89
Os10t0484900-00	Rice	mitochondrion	84.47	43.22
EER91465	Sorghum	mitochondrion	80.37	40.0
Zm00001d032661_P001	Maize	mitochondrion	79.91	39.95
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	42.92	34.31
VIT_01s0010g01460.t01	Wine grape	mitochondrion	35.16	19.95
Zm00001d013990_P001	Maize	mitochondrion, plastid	18.26	15.75
TraesCS3A01G326500.1	Wheat	mitochondrion	26.03	14.62
TraesCS3A01G331700.1	Wheat	plastid	25.57	13.11
TraesCS3A01G331600.1	Wheat	plastid	26.94	12.85
TraesCS6A01G221200.1	Wheat	mitochondrion	26.48	12.55
TraesCS3A01G324300.1	Wheat	plastid	24.66	12.5
TraesCS3A01G324200.1	Wheat	plastid	25.11	12.09
TraesCS3A01G324500.1	Wheat	plastid	25.57	11.84
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	19.18	10.85
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	20.55	10.04

Protein Annotations

EnsemblPlants:TraesCS1A01G160400.1	EnsemblPlantsGene:TraesCS1A01G160400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF559
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1A:-:287689455..287690114

Molecular Weight (calculated)

24481.7 Da

IEP (calculated)

8.854

GRAVY (calculated)

-0.342

Length

219 amino acids

Sequence
(BLAST)

001: MAKKKFKHRP PADIISYNTL LAGFSEQDDA EEFEKLLKEI NENKLEPNVV TYNCRMRWFA RKGETFKGEE LLDVMESKGV LPNYVTYNAL VQGYCKEGNV
101: GAAMRVFKRM KVMKRREGRS DLGVSVHSQT YVLLFKSLVE KERLDDALWL CNSCFAMKAA PSFEAVKGLV EGLVKGGRSA EAKGVVAKMN FLVKGDAKVA
201: WEKIAGELSL EEGAPSSDP

Best Arabidopsis Sequence Match ( AT1G12775.1 )
(BLAST)

001: MVRMMIRRLS SQASRFVQPR LLETGTLRIA LINCPNELLF CCERGFSTFS DRNLSYRDKL SSGLVGIKAD DAVDLFRDMI QSRPLPTVID FNRLFSAIAK
101: TKQYELVLAL CKQMESKGIA HSIYTLSIMI NCFCRCRKLS YAFSTMGKIM KLGYEPDTVI FNTLLNGLCL ECRVSEALEL VDRMVEMGHK PTLITLNTLV
201: NGLCLNGKVS DAVVLIDRMV ETGFQPNEVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKDGSLD NAFNLFNEME IKGFKADIIT
301: YNTLIGGFCN AGRWDDGAKL LRDMIKRKIS PNVVTFSVLI DSFVKEGKLR EADQLLKEMM QRGIAPNTIT YNSLIDGFCK ENRLEEAIQM VDLMISKGCD
401: PDIMTFNILI NGYCKANRID DGLELFREMS LRGVIANTVT YNTLVQGFCQ SGKLEVAKKL FQEMVSRRVR PDIVSYKILL DGLCDNGELE KALEIFGKIE
501: KSKMELDIGI YMIIIHGMCN ASKVDDAWDL FCSLPLKGVK LDARAYNIMI SELCRKDSLS KADILFRKMT EEGHAPDELT YNILIRAHLG DDDATTAAEL
601: IEEMKSSGFP ADVSTVKMVI NMLSSGELDK SFLDMLSTTR ASLK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12775, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LPX2]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.