Factsheet for Zm00001d032661_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91465	Sorghum	mitochondrion	93.84	93.41
TraesCS1A01G160400.1	Wheat	cytosol	39.95	79.91
Os10t0484900-00	Rice	mitochondrion	77.85	79.67
TraesCS1B01G176200.1	Wheat	mitochondrion	76.48	78.64
HORVU1Hr1G042520.2	Barley	mitochondrion	75.57	73.56
Zm00001d013990_P001	Maize	mitochondrion, plastid	42.01	72.44
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	29.68	47.45
Zm00001d018534_P001	Maize	mitochondrion	36.3	37.95
VIT_01s0010g01460.t01	Wine grape	mitochondrion	29.45	33.42
Zm00001d043225_P001	Maize	mitochondrion	23.29	25.95
Zm00001d017317_P001	Maize	mitochondrion	25.8	23.99
Zm00001d006609_P001	Maize	cytosol	16.44	23.08
Zm00001d014711_P001	Maize	cytosol	14.84	22.89
Zm00001d012606_P001	Maize	mitochondrion	22.83	22.08
Zm00001d031321_P001	Maize	mitochondrion	22.37	21.35

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100502248	MapMan:35.1	EMBL:BT087523	UniProt:C4J9M6	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	ProteinID:ONM05674.1	PFAM:PF12854
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF559	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A4C90B	EnsemblPlantsGene:Zm00001d032661	EnsemblPlants:Zm00001d032661_P001	EnsemblPlants:Zm00001d032661_T001	SEG:seg

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr1:+:233439130..233440804

Molecular Weight (calculated)

47224.0 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.082

Length

438 amino acids

Sequence
(BLAST)

001: MASLLLHRRH GAHPRAAAAA CARLLRAFSA LPDIDPSASS TASPSPAAPT STSARASVLD LQLAVRAESD PARIHSLVAS ALSSHDMPRL HTSRQLFSLA
101: TSRLIRLRRA DLAASLLDLL LASTPPSPGL LARALSLYPG PDDALRAFSS SPPAARSDVS LSALLSAFLR AGRLDDIKST ITLAESSHGV APGRASHNVL
201: LHALVKNSEL AAARKLLDEM ANKKLKHRPA PDIISYNTVL AGYSVQDDED EFGKLLKEIS LSNLEPNVVT YNCRIQWFSK KGETVKGEEL LDVMESKEIA
301: PNYVTYNALV QGYCKEGNVG AAMRVFKRMK VMKRREGRSD LGVSAHSQVY VVLFRSLVEK EKLNDALWIC KSCFAMKAAP PFEAVKGLVE GLVKAGRSTE
401: AKDVVAKMEF LVKGDAKLAW GKVVGELSFE EGSPNLNP

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.