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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 5
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:plastid
 mitochondrion: 27297264
mitochondrion: 29575040
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 29575040 doi
WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d003300_P001
Zm00001d017072_P002
Zm00001d017793_P001
Zm00001d040272_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G55890.1 Zm00001d017793_P001 AT3G27960.1 21798944
AT1G55890.1 Zm00001d051589_P001 AT3G27960.1 21798944
AT1G55890.1 Zm00001d003300_P001 AT4G24690.1 21798944
AT1G55890.1 Zm00001d017072_P002 AT4G24690.1 21798944
AT1G55890.1 Zm00001d040272_P001 AT4G24690.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES01580 Sorghum mitochondrion 81.24 83.83
EER95222 Sorghum mitochondrion 78.81 72.41
HORVU3Hr1G077400.1 Barley cytosol 52.1 61.62
Os01t0785700-01 Rice mitochondrion 55.63 58.06
TraesCS3A01G331700.1 Wheat plastid 53.2 56.44
TraesCS3B01G353300.1 Wheat plastid 51.88 56.22
TraesCS3A01G324200.1 Wheat plastid 56.29 56.04
TraesCS3A01G324300.1 Wheat plastid 52.76 55.32
TraesCS3D01G317700.1 Wheat plastid 57.4 55.08
TraesCS3B01G361800.1 Wheat plastid 52.76 54.44
TraesCS3A01G324500.1 Wheat plastid 55.85 53.49
TraesCS3D01G325200.1 Wheat plastid 52.98 53.45
HORVU3Hr1G077440.2 Barley mitochondrion 56.95 52.55
TraesCS3A01G331600.1 Wheat plastid 52.54 51.85
HORVU6Hr1G019320.1 Barley plastid 52.32 51.08
TraesCS3B01G353500.1 Wheat plastid 55.63 50.1
TraesCS3D01G317800.1 Wheat plastid 55.63 50.1
GSMUA_Achr10P... Banana mitochondrion 37.75 42.64
VIT_00s0271g00040.t01 Wine grape cytosol 18.76 41.67
VIT_00s0274g00040.t01 Wine grape mitochondrion 34.88 41.36
VIT_00s0271g00080.t01 Wine grape mitochondrion 32.45 40.5
PGSC0003DMT400012953 Potato cytosol 31.35 37.47
Solyc03g031460.1.1 Tomato plastid 31.13 37.2
KRH41973 Soybean nucleus 31.13 37.01
VIT_00s0271g00070.t01 Wine grape mitochondrion 30.91 36.94
PGSC0003DMT400071165 Potato extracellular 13.69 35.23
KRH49916 Soybean cytosol 30.68 34.75
VIT_00s0271g00050.t01 Wine grape mitochondrion 17.22 34.36
Bra039373.1-P Field mustard cytosol 20.75 34.31
AT1G55890.1 Thale cress mitochondrion 30.02 34.17
CDY08267 Canola mitochondrion 29.8 34.01
Bra037096.1-P Field mustard mitochondrion 29.8 34.01
CDY66550 Canola mitochondrion 22.08 33.44
CDY26081 Canola mitochondrion 29.14 33.33
AT3G13160.1 Thale cress mitochondrion 28.48 32.74
CDX82550 Canola mitochondrion 28.26 32.57
CDY43367 Canola mitochondrion 28.26 32.49
CDY24208 Canola mitochondrion 28.26 32.49
Bra001492.1-P Field mustard mitochondrion 28.48 32.25
PGSC0003DMT400055888 Potato mitochondrion 26.71 32.1
PGSC0003DMT400055889 Potato plastid 27.37 31.55
Solyc02g079830.1.1 Tomato mitochondrion 27.59 31.25
Solyc02g079820.2.1 Tomato cytosol, plastid 20.53 29.71
Zm00001d018534_P001 Maize mitochondrion 24.72 26.73
CDY24210 Canola plastid 25.17 26.03
CDY43368 Canola plastid 25.17 25.97
Zm00001d006609_P001 Maize cytosol 17.88 25.96
Zm00001d043225_P001 Maize mitochondrion 22.52 25.95
Zm00001d014711_P001 Maize cytosol 15.45 24.65
Bra039372.1-P Field mustard cytosol, plastid 25.39 24.06
Zm00001d031321_P001 Maize mitochondrion 23.62 23.31
Zm00001d032661_P001 Maize mitochondrion 22.08 22.83
Zm00001d017317_P001 Maize mitochondrion 22.74 21.87
Zm00001d013990_P001 Maize mitochondrion, plastid 12.14 21.65
AT3G13150.1 Thale cress plastid 26.27 21.6
Protein Annotations
Gene3D:1.25.40.10EntrezGene:103636586MapMan:35.1ProteinID:AQK99940.1GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR002885InterPro:IPR011990UniProt:K7VPB0PFAM:PF01535PFAM:PF13041
PFscan:PS51375PANTHER:PTHR24015PANTHER:PTHR24015:SF1622InterPro:Pentatricopeptide_repeatTIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001CA9547EnsemblPlantsGene:Zm00001d012606EnsemblPlants:Zm00001d012606_P001EnsemblPlants:Zm00001d012606_T001SEG:seg:
Description
Pentatricopeptide repeat-containing protein mitochondrial
Coordinates
chr8:-:177094098..177095459
Molecular Weight (calculated)
50021.6 Da
IEP (calculated)
8.315
GRAVY (calculated)
-0.421
Length
453 amino acids
Sequence
(BLAST)
001: MASPAAASPA RRLSVIFSST KPRARPPKPA PAPKAPAGQA VAKPDERCES RNLTKILQVI FRERDPDKLV SQFIAESTAS ERFRNKHRVY DVAVARLASF
101: GRHDGIAAII DSQKPFIAAS SVGFAARLIR LCGRASMPSH AAAIFHDLPP KHKSSMTFNA LLAAYLDASD FDALATALQE IPATHPTIAP TIYSHNILIS
201: ALCKKPDLSA AVDVITLMEK RGITPDIISF NILLNGFYSN DRFDDVEKVW EMMKERNVEP DARSYNAKLR GLVSQGRVED AAALIERMQK EGPKPDSVSY
301: NELIRGYCNE GRLNEAKKVY DNMIKNGYAP NRGTFHTLVP HFVEAGELDH ALSCCHEIFT RKCRVQCSLL QGVVTALFAA SRVEEAKRIV HLGRENYYPR
401: KGLRMPPRTR KDEGLKMPQP GGEGNDVEAG TDSEDSVSYE DGCEQEEESK NGQ
Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)
001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.