Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 5
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY66550 | Canola | mitochondrion | 61.42 | 80.94 |
| CDY43367 | Canola | mitochondrion | 80.46 | 80.46 |
| CDY24208 | Canola | mitochondrion | 79.95 | 79.95 |
| Bra039373.1-P | Field mustard | cytosol | 55.33 | 79.56 |
| CDX82550 | Canola | mitochondrion | 78.17 | 78.37 |
| Bra001492.1-P | Field mustard | mitochondrion | 79.44 | 78.25 |
| AT1G55890.1 | Thale cress | mitochondrion | 67.77 | 67.09 |
| VIT_00s0271g00080.t01 | Wine grape | mitochondrion | 47.72 | 51.79 |
| VIT_00s0274g00040.t01 | Wine grape | mitochondrion | 49.49 | 51.05 |
| PGSC0003DMT400012953 | Potato | cytosol | 48.98 | 50.92 |
| Solyc03g031460.1.1 | Tomato | plastid | 48.48 | 50.4 |
| KRH41973 | Soybean | nucleus | 45.94 | 47.51 |
| KRH49916 | Soybean | cytosol | 46.7 | 46.0 |
| GSMUA_Achr10P... | Banana | mitochondrion | 34.77 | 34.16 |
| HORVU3Hr1G077400.1 | Barley | cytosol | 30.96 | 31.85 |
| Os01t0785700-01 | Rice | mitochondrion | 32.23 | 29.26 |
| Zm00001d012606_P001 | Maize | mitochondrion | 32.74 | 28.48 |
| EES01580 | Sorghum | mitochondrion | 31.47 | 28.25 |
| TraesCS3A01G324300.1 | Wheat | plastid | 30.96 | 28.24 |
| EES01579 | Sorghum | mitochondrion | 30.71 | 28.21 |
| TraesCS3B01G361800.1 | Wheat | plastid | 30.71 | 27.56 |
| AT3G13150.1 | Thale cress | plastid | 38.32 | 27.4 |
| TraesCS3A01G331700.1 | Wheat | plastid | 29.44 | 27.17 |
| TraesCS3D01G325200.1 | Wheat | plastid | 30.71 | 26.95 |
| TraesCS3A01G324500.1 | Wheat | plastid | 32.23 | 26.85 |
| TraesCS3A01G324200.1 | Wheat | plastid | 30.96 | 26.81 |
| AT1G80150.1 | Thale cress | mitochondrion | 26.9 | 26.7 |
| AT1G61870.1 | Thale cress | mitochondrion | 27.41 | 26.47 |
| AT1G11630.1 | Thale cress | mitochondrion | 27.16 | 26.42 |
| TraesCS3A01G331600.1 | Wheat | plastid | 30.71 | 26.36 |
| TraesCS3B01G353300.1 | Wheat | plastid | 27.92 | 26.32 |
| AT4G36680.1 | Thale cress | mitochondrion | 27.41 | 26.21 |
| TraesCS3D01G317700.1 | Wheat | plastid | 31.22 | 26.06 |
| HORVU3Hr1G077440.2 | Barley | mitochondrion | 31.98 | 25.66 |
| HORVU6Hr1G019320.1 | Barley | plastid | 29.7 | 25.22 |
| TraesCS3D01G317800.1 | Wheat | plastid | 31.73 | 24.85 |
| TraesCS3B01G353500.1 | Wheat | plastid | 31.47 | 24.65 |
| EER95222 | Sorghum | mitochondrion | 30.71 | 24.54 |
| AT2G18520.1 | Thale cress | mitochondrion | 25.63 | 24.16 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:820505 | ProteinID:AEE75303.1 | ArrayExpress:AT3G13160 | EnsemblPlantsGene:AT3G13160 |
| RefSeq:AT3G13160 | TAIR:AT3G13160 | RefSeq:AT3G13160-TAIR-G | EnsemblPlants:AT3G13160.1 | TAIR:AT3G13160.1 | EMBL:AY088725 |
| EMBL:AY136471 | ProteinID:BAB01407.1 | EMBL:BT002597 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0043231 |
| GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_566445.1 | PFAM:PF01535 | PFAM:PF13041 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF1622 | InterPro:Pentatricopeptide_repeat |
| UniProt:Q9LK57 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000AC465 | SEG:seg | : |
Description
Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
Coordinates
chr3:-:4229829..4231408
Molecular Weight (calculated)
44930.3 Da
IEP (calculated)
8.179
GRAVY (calculated)
-0.318
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.