CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82550	Canola	mitochondrion	94.65	72.01
CDY43367	Canola	mitochondrion	87.63	66.5
CDY24208	Canola	mitochondrion	86.96	65.99
AT3G13160.1	Thale cress	mitochondrion	80.94	61.42
CDY26081	Canola	mitochondrion	67.56	51.01
CDY08267	Canola	mitochondrion	67.22	50.63
VIT_00s0271g00080.t01	Wine grape	mitochondrion	51.51	42.42
VIT_00s0274g00040.t01	Wine grape	mitochondrion	51.51	40.31
PGSC0003DMT400012953	Potato	cytosol	48.16	37.99
Solyc03g031460.1.1	Tomato	plastid	47.16	37.2
KRH41973	Soybean	nucleus	45.15	35.43
KRH49916	Soybean	cytosol	44.82	33.5
CDY24210	Canola	plastid	38.8	26.48
CDY43368	Canola	plastid	38.8	26.42
GSMUA_Achr10P...	Banana	mitochondrion	34.11	25.44
HORVU3Hr1G077400.1	Barley	cytosol	30.43	23.76
TraesCS3A01G324300.1	Wheat	plastid	32.44	22.45
CDY67618	Canola	mitochondrion	31.44	22.43
CDY66741	Canola	mitochondrion	31.1	22.2
CDY35471	Canola	mitochondrion	30.1	22.11
CDY24774	Canola	mitochondrion	30.1	22.11
CDY37572	Canola	mitochondrion	29.43	22.11
Zm00001d012606_P001	Maize	mitochondrion	33.44	22.08
TraesCS3B01G353300.1	Wheat	plastid	30.77	22.01
CDY38649	Canola	mitochondrion	28.43	21.91
CDY57688	Canola	mitochondrion	28.43	21.74
CDY54310	Canola	mitochondrion	28.43	21.74
Os01t0785700-01	Rice	mitochondrion	31.44	21.66
EES01580	Sorghum	mitochondrion	31.44	21.41
TraesCS3A01G324200.1	Wheat	plastid	31.77	20.88
TraesCS3B01G361800.1	Wheat	plastid	30.43	20.73
EES01579	Sorghum	mitochondrion	29.43	20.51
TraesCS3D01G325200.1	Wheat	plastid	30.43	20.27
TraesCS3D01G317700.1	Wheat	plastid	31.77	20.13
TraesCS3A01G331700.1	Wheat	plastid	28.43	19.91
TraesCS3A01G324500.1	Wheat	plastid	31.1	19.66
HORVU6Hr1G019320.1	Barley	plastid	30.1	19.4
CDY25328	Canola	mitochondrion, plastid	26.42	19.36
TraesCS3A01G331600.1	Wheat	plastid	29.43	19.17
CDY47165	Canola	mitochondrion	26.09	19.12
EER95222	Sorghum	mitochondrion	31.1	18.86
HORVU3Hr1G077440.2	Barley	mitochondrion	30.77	18.74
CDY49792	Canola	plastid	25.42	18.63
TraesCS3B01G353500.1	Wheat	plastid	31.1	18.49
TraesCS3D01G317800.1	Wheat	plastid	31.1	18.49
CDX97972	Canola	cytosol	16.05	17.2
CDY07260	Canola	cytosol	8.03	15.69

Protein Annotations

EnsemblPlants:CDY66550	EnsemblPlantsGene:GSBRNA2T00054527001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052
PFAM:PF13041	PFscan:PS51375	ProteinID:CDY66550	ProteinID:CDY66550.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EE9306	UniProt:A0A078JJA0	MapMan:35.1	:	:	:

Description

BnaCnng51380DBnaCnng51380D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJA0]

Coordinates

chrLK035318:-:5336..6235

Molecular Weight (calculated)

33872.6 Da

IEP (calculated)

8.193

GRAVY (calculated)

-0.367

Length

299 amino acids

Sequence
(BLAST)

001: MSFLSRLLLR STNSFNTTTT TNIRFSSAVA ATSQRTPSLI TLVNDENDPK HITEKFKKAC QTEWFRKNKP VYERTVRRLA AAKKFEWVEE ILEEQNKYPN
101: MSKEGFVARI INLYGRAGMF ENAQKVFDEM PQRNCKRSVL SFNALLNACV NSKKFDLVEG IFNELPAKLS IVPDIASYNT LIKGLCGKGS LSEAVALIDE
201: IENKGLKPDH FSYNLLLHES YTKGHFDQGE ELWSRMVEKD VARDIRSYNA RLLGLALEMK SEEMVSLFEE LKGNGIKPDV FTFTALVRGC AGEGKVDEA

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.