CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47165	Canola	mitochondrion	97.79	97.79
AT1G61870.1	Thale cress	mitochondrion	87.99	87.99
CDY07260	Canola	cytosol	32.11	85.62
VIT_10s0116g00030.t01	Wine grape	plastid	62.01	63.89
CDY49792	Canola	plastid	62.75	62.75
CDX97972	Canola	cytosol	42.65	62.37
Solyc10g005280.1.1	Tomato	mitochondrion	58.33	59.2
PGSC0003DMT400029367	Potato	mitochondrion	57.84	58.71
KRH11411	Soybean	nucleus	55.39	58.25
GSMUA_Achr11P...	Banana	cytosol	27.45	57.44
VIT_10s0116g00090.t01	Wine grape	mitochondrion	35.78	57.25
KRH20872	Soybean	mitochondrion	23.04	53.41
GSMUA_Achr6P00410_001	Banana	mitochondrion	45.59	52.84
Os01t0793200-01	Rice	mitochondrion	46.32	48.46
EES01589	Sorghum	mitochondrion	45.34	47.19
TraesCS3A01G326500.1	Wheat	mitochondrion	45.1	47.18
Zm00001d043225_P001	Maize	mitochondrion	45.34	47.07
TraesCS3B01G355800.1	Wheat	mitochondrion	44.61	46.67
KRH20873	Soybean	cytosol, mitochondrion	14.46	46.46
TraesCS3D01G319900.1	Wheat	mitochondrion	37.99	45.86
HORVU3Hr1G077780.1	Barley	mitochondrion	43.38	45.38
HORVU5Hr1G041750.1	Barley	cytosol	26.23	30.14
CDY35471	Canola	mitochondrion	28.68	28.75
CDY24774	Canola	mitochondrion	28.68	28.75
CDY57688	Canola	mitochondrion	27.21	28.39
CDY38649	Canola	mitochondrion	26.96	28.35
CDY37572	Canola	mitochondrion	27.45	28.14
CDY54310	Canola	mitochondrion	26.72	27.88
CDY26081	Canola	mitochondrion	26.47	27.27
CDY43367	Canola	mitochondrion	26.23	27.16
CDY08267	Canola	mitochondrion	26.23	26.95
CDY67618	Canola	mitochondrion	27.45	26.73
CDY24208	Canola	mitochondrion	25.74	26.65
CDY66741	Canola	mitochondrion	27.21	26.49
CDY66550	Canola	mitochondrion	19.36	26.42
CDX82550	Canola	mitochondrion	25.25	26.21
CDY43368	Canola	plastid	25.25	23.46
CDY24210	Canola	plastid	25.0	23.29

Protein Annotations

EnsemblPlants:CDY25328	EnsemblPlantsGene:GSBRNA2T00029428001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY25328	ProteinID:CDY25328.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EDD240	UniProt:A0A078GL37	MapMan:17.7.1.3.2	:

Description

BnaC01g29970DBnaC01g29970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GL37]

Coordinates

chrLK032173:-:398399..399934

Molecular Weight (calculated)

45573.3 Da

IEP (calculated)

8.909

GRAVY (calculated)

-0.231

Length

408 amino acids

Sequence
(BLAST)

001: MALLTRIRSS ASLLRHLNPS PQIRSLSSAS SILSPDSKTP LTSKQKSKTA LSLLKTERDP DRILEICRAA SLTPDCHIDR LAFSAAVQNL TENKHFSAVT
101: NLLDGLLENR PDLKTERFAA HAIVLYAQAN MLDHSLRVFS DLEKLEIQRT VKSLNALLFA CLVAKDYKEA KRVYIEIPKM YKIEPDLETY DRMIKVFCES
201: GSASSSYSIV AEMERKGVKP TSSTFGLMIA GFYREDKKED VGKVLAMMKE RGVSIGVSTH NIRIQSLCKK KRSGEAKALL DGMLSSGMKP NAVTYGHLIH
301: GFCNEGEFDE AKKLFKAMVN RGCKPDSECY FTLVYYLCKG GDFEAALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIAQVKE KFTRNVELWN
401: EVEAALPL

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.