Factsheet for VIT_10s0116g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g00090.t01	Wine grape	mitochondrion	62.12	96.47
PGSC0003DMT400029367	Potato	mitochondrion	67.17	66.17
Solyc10g005280.1.1	Tomato	mitochondrion	66.92	65.92
KRH11411	Soybean	nucleus	63.38	64.69
AT1G61870.1	Thale cress	mitochondrion	64.14	62.25
Bra028380.1-P	Field mustard	mitochondrion	63.89	62.01
CDY25328	Canola	mitochondrion, plastid	63.89	62.01
CDY07260	Canola	cytosol	23.74	61.44
CDY47165	Canola	mitochondrion	63.13	61.27
KRH20872	Soybean	mitochondrion	26.52	59.66
GSMUA_Achr6P00410_001	Banana	mitochondrion	51.26	57.67
GSMUA_Achr11P...	Banana	cytosol	27.78	56.41
AT1G11630.1	Thale cress	mitochondrion	56.31	55.06
Bra019842.1-P	Field mustard	cytosol	36.62	51.97
CDX97972	Canola	cytosol	36.62	51.97
KRH20873	Soybean	cytosol, mitochondrion	16.16	50.39
CDY49792	Canola	plastid	51.52	50.0
Os01t0793200-01	Rice	mitochondrion	47.47	48.21
TraesCS3A01G326500.1	Wheat	mitochondrion	46.46	47.18
EES01589	Sorghum	mitochondrion	46.21	46.68
TraesCS3B01G355800.1	Wheat	mitochondrion	45.96	46.67
TraesCS3D01G319900.1	Wheat	mitochondrion	39.65	46.45
HORVU3Hr1G077780.1	Barley	mitochondrion	45.71	46.41
Zm00001d043225_P001	Maize	mitochondrion	45.45	45.8
VIT_00s0271g00040.t01	Wine grape	cytosol	17.17	33.33
HORVU5Hr1G041750.1	Barley	cytosol	29.8	33.24
VIT_01s0010g01460.t01	Wine grape	mitochondrion	32.32	33.16
VIT_04s0023g01460.t01	Wine grape	mitochondrion	31.06	29.71
VIT_00s0271g00070.t01	Wine grape	mitochondrion	27.78	29.02
VIT_09s0002g06540.t01	Wine grape	mitochondrion	30.05	28.2
VIT_00s0271g00080.t01	Wine grape	mitochondrion	25.25	27.55
VIT_00s0274g00040.t01	Wine grape	mitochondrion	26.52	27.49
VIT_00s0271g00050.t01	Wine grape	mitochondrion	14.9	25.99

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100854516	wikigene:100854516	MapMan:17.7.1.3.2	EMBL:AM426541	ProteinID:CAN77919
ProteinID:CAN77919.1	ProteinID:CCB57250	ProteinID:CCB57250.1	UniProt:F6HRE2	EMBL:FN596012	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100854516	wikigene:LOC100854516	PFAM:PF01535
PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002108B72	ArrayExpress:VIT_10s0116g00030	EnsemblPlantsGene:VIT_10s0116g00030
EnsemblPlants:VIT_10s0116g00030.t01	RefSeq:XP_003634851	RefSeq:XP_003634851.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr10_random:+:17537..19181

Molecular Weight (calculated)

44696.0 Da

IEP (calculated)

8.709

GRAVY (calculated)

-0.263

Length

396 amino acids

Sequence
(BLAST)

001: MAFLSRLRPI SSHRCRFFSS ILSPDSATPL SSKEKSRAAL SLLKSEQDPQ RILEICRAAA LTPESHLDRV AFSVAISKLA DSKHFDSIRH FLDELKARPD
101: LRTERFVSHA IVLFGQAGML NDAVRTFEQM HQLGVDRTVR SLNALLFSCI LAKNYKEANR IFLEFPKTYG IELNLDSYNT VLKAFSESGS SSSGYSILAE
201: MGRKGVKPNA TSFGILLAGF YNEEKYEDVG KVLKMMEEYK MQPGISTYNI RIQSLCKLKK SSEAKALLDG ILARRMKPNS ETYCHLIHGF CKEGNLDEAK
301: KLFKDMVNRG CKPDSDCYFT LVYFLCQGGD FESALRFCKE CMEKGWFPNI STMTSLVNGL VSISKVEEAR ELIGQIKEKF SRNVDKWNEI EAGLPQ

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.