Factsheet for VIT_04s0023g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36680.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090439	Potato	plastid	65.46	66.75
Solyc02g062910.1.1	Tomato	plastid	64.49	64.18
PGSC0003DMT400039992	Potato	cytosol	62.8	63.26
AT4G36680.1	Thale cress	mitochondrion	61.35	61.65
Solyc02g085550.1.1	Tomato	plastid	36.47	61.63
CDY24774	Canola	mitochondrion	55.8	56.76
Bra010568.1-P	Field mustard	mitochondrion	55.56	56.51
CDY35471	Canola	mitochondrion	55.31	56.27
CDY67618	Canola	mitochondrion	54.83	54.18
AT2G18520.1	Thale cress	mitochondrion	54.59	54.07
CDY66741	Canola	mitochondrion	54.59	53.94
Bra037216.1-P	Field mustard	mitochondrion	54.59	53.94
GSMUA_Achr1P01950_001	Banana	mitochondrion	40.82	43.78
Solyc02g085650.2.1	Tomato	plastid	64.98	41.64
VIT_00s0271g00040.t01	Wine grape	cytosol	17.63	35.78
Zm00001d017317_P001	Maize	mitochondrion	39.86	35.03
Os02t0633200-01	Rice	mitochondrion	38.16	34.73
VIT_00s0271g00070.t01	Wine grape	mitochondrion	31.16	34.04
VIT_00s0271g00050.t01	Wine grape	mitochondrion	18.6	33.92
TraesCS6A01G221200.1	Wheat	mitochondrion	37.68	33.77
TraesCS6B01G260000.1	Wheat	mitochondrion	37.44	33.55
TraesCS6D01G214000.1	Wheat	mitochondrion	37.44	33.55
VIT_00s0271g00080.t01	Wine grape	mitochondrion	29.23	33.33
EES05467	Sorghum	mitochondrion	37.68	33.33
VIT_00s0274g00040.t01	Wine grape	mitochondrion	30.68	33.25
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	30.68	32.82
HORVU6Hr1G059290.1	Barley	cytosol	37.92	32.64
VIT_10s0116g00030.t01	Wine grape	plastid	29.71	31.06
VIT_10s0116g00090.t01	Wine grape	mitochondrion	19.08	30.98
VIT_09s0002g06540.t01	Wine grape	mitochondrion	28.74	28.2
VIT_01s0010g01460.t01	Wine grape	mitochondrion	24.88	26.68

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100246188	wikigene:100246188	MapMan:35.1	EMBL:AM471698	ProteinID:CAN68320
ProteinID:CAN68320.1	ProteinID:CCB44467	ProteinID:CCB44467.1	UniProt:F6GWY1	EMBL:FN594959	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0080156
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100246188	wikigene:LOC100246188	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF506	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901
TIGR:TC66623	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001983174	ArrayExpress:VIT_04s0023g01460	EnsemblPlantsGene:VIT_04s0023g01460
EnsemblPlants:VIT_04s0023g01460.t01	unigene:Vvi.14490	RefSeq:XP_002271426	RefSeq:XP_002271426.1	SEG:seg	:

Description

No Description!

Coordinates

chr4:+:18009469..18011027

Molecular Weight (calculated)

46091.1 Da

IEP (calculated)

9.028

GRAVY (calculated)

-0.337

Length

414 amino acids

Sequence
(BLAST)

001: MSCSLARHLR HVRHLSTAAA AAASTAAASA SSSSISVSRA KSILRSEFDP DRALEIYSSV SKHYTSPLAS RYAQDLTVKR LAKSRRFADI ETLIESHKND
101: PKITQEPYLS TLIRSYGIAG MFQHALRTFN QMEELGTPRS SISFNALLSA CNQSKLFDQV PKFFEEIPRR YGVLPDKISY GILVKSYCES GLSDKAISML
201: KEMEEKGVEI TAVTFTTILD ALYKQGQSDR AEKVWHEMAK KGCLDVGAYN VKIMFAHGGD PENVKALIDE MSNAGLKPDT ISYNYLMTSY CKSGMVDEAK
301: KVYAELEETG CHPNAATFRT LIYYLCRSGD FETGYKVFKQ SAFRRKIPDF GTLRHLVEGL VQKKKTKEAK GLIRTVKKNF PANFLNVWRK LEEDLGLAGV
401: DSSPAADDVQ EATS

Best Arabidopsis Sequence Match ( AT4G36680.1 )
(BLAST)

001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M065]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.