CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67618	Canola	mitochondrion	97.37	97.37
AT2G18520.1	Thale cress	mitochondrion	82.34	82.54
CDY24774	Canola	mitochondrion	63.48	65.36
CDY35471	Canola	mitochondrion	62.77	64.62
PGSC0003DMT400090439	Potato	plastid	52.98	54.68
VIT_04s0023g01460.t01	Wine grape	mitochondrion	53.94	54.59
Solyc02g062910.1.1	Tomato	plastid	52.03	52.4
PGSC0003DMT400039992	Potato	cytosol	50.84	51.82
Solyc02g085550.1.1	Tomato	plastid	28.16	48.16
GSMUA_Achr1P01950_001	Banana	mitochondrion	41.29	44.82
Zm00001d017317_P001	Maize	mitochondrion	39.14	34.82
Os02t0633200-01	Rice	mitochondrion	37.71	34.73
Solyc02g085650.2.1	Tomato	plastid	52.98	34.37
EES05467	Sorghum	mitochondrion	37.23	33.33
TraesCS6A01G221200.1	Wheat	mitochondrion	36.52	33.12
TraesCS6D01G214000.1	Wheat	mitochondrion	36.52	33.12
TraesCS6B01G260000.1	Wheat	mitochondrion	35.8	32.47
HORVU6Hr1G059290.1	Barley	cytosol	36.52	31.81
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	29.12	31.52
CDY66550	Canola	mitochondrion	22.2	31.1
CDY54310	Canola	mitochondrion	27.68	29.67
CDY57688	Canola	mitochondrion	27.45	29.41
CDY38649	Canola	mitochondrion	27.21	29.38
CDY26081	Canola	mitochondrion	27.68	29.29
CDY08267	Canola	mitochondrion	27.68	29.22
CDY37572	Canola	mitochondrion	27.21	28.64
CDX97972	Canola	cytosol	18.14	27.24
CDY49792	Canola	plastid	26.49	27.21
CDY25328	Canola	mitochondrion, plastid	26.49	27.21
CDX82550	Canola	mitochondrion	25.3	26.97
CDY47165	Canola	mitochondrion	26.01	26.72
CDY43367	Canola	mitochondrion	24.58	26.14
CDY24208	Canola	mitochondrion	24.58	26.14
CDY07260	Canola	cytosol	8.83	24.18
CDY43368	Canola	plastid	23.87	22.78
CDY24210	Canola	plastid	23.63	22.6

Protein Annotations

EnsemblPlants:CDY66741	EnsemblPlantsGene:GSBRNA2T00055658001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF506
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY66741	ProteinID:CDY66741.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EE7684	UniProt:A0A078JLR9	MapMan:35.1	:	:

Description

BnaCnng52150DBnaCnng52150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLR9]

Coordinates

chrLK035435:-:3891..5314

Molecular Weight (calculated)

47196.8 Da

IEP (calculated)

8.930

GRAVY (calculated)

-0.355

Length

419 amino acids

Sequence
(BLAST)

001: MTPSRLYLYF LRRFSTAVTE STTTASPAAI TVSKAKSKLR KVHDPDKALA IYNSVSSNAS SPLSSRYAME LTVRRLVRSH RFSDVEALIE SRKKDPQIKT
101: ESFLSTLIRS YGRASMFDHA MRTFEEMEQL GTPRSVVSFN ALLAACLHSD LFERVPQLFD EMPQRYRNIT PDKVSYGMLI KSYCDAGSVD KAMETMRVME
201: EKGVEVNIIS FTTILGSLYK NGQTDVAESL WSEMMSKGCE LDNTVYNVRL MNAAKESPER VKELMDEMSS VGLKPDTISY NYLMTAYCVK GMMGEAKKVY
301: EGLDEKEGCC ANAATFRTLI FHLCINGLYD QGLVVFKKSA LVHKIPDFKT CKHLTEGLVR NNRMEDARGV ARIVKKKYPP RLVTEWKKLE ESLGLYTKAN
401: AAGSSRTRQV SDQESDADA

Best Arabidopsis Sequence Match ( AT2G18520.1 )
(BLAST)

001: MTSSRLYLRF LRRFSTATGI DSQTTAYPGA ITMSKAKSKL RKVQDPDKAL AIYKSVSNNS TSPLSSRYAM ELTVQRLAKS QRFSDIEALI ESHKNNPKIK
101: TETFLSTLIR SYGRASMFDH AMKMFEEMDK LGTPRTVVSF NALLAACLHS DLFERVPQLF DEFPQRYNNI TPDKISYGML IKSYCDSGKP EKAMEIMRDM
201: EVKGVEVTII AFTTILGSLY KNGLVDEAES LWIEMVNKGC DLDNTVYNVR LMNAAKESPE RVKELMEEMS SVGLKPDTVS YNYLMTAYCV KGMMSEAKKV
301: YEGLEQPNAA TFRTLIFHLC INGLYDQGLT VFKKSAIVHK IPDFKTCKHL TEGLVKNNRM EDARGVARIV KKKFPPRLVT EWKKLEEKLG LYSKGNAAAV
401: SSSSQTREVL DQEREDDV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18520, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU67]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.