Factsheet for Solyc02g085550.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36680.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT4G36680.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT4G36680.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT4G36680.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090439	Potato	plastid	84.49	50.99
Solyc02g062910.1.1	Tomato	plastid	70.61	41.59
VIT_04s0023g01460.t01	Wine grape	mitochondrion	61.63	36.47
Solyc02g085650.2.1	Tomato	plastid	86.53	32.82
AT4G36680.1	Thale cress	mitochondrion	54.69	32.52
CDY24774	Canola	mitochondrion	52.24	31.45
Bra010568.1-P	Field mustard	mitochondrion	51.84	31.2
CDY35471	Canola	mitochondrion	51.02	30.71
AT2G18520.1	Thale cress	mitochondrion	51.02	29.9
CDY67618	Canola	mitochondrion	49.39	28.88
Bra037216.1-P	Field mustard	mitochondrion	49.39	28.88
CDY66741	Canola	mitochondrion	48.16	28.16
GSMUA_Achr1P01950_001	Banana	mitochondrion	37.55	23.83
Solyc03g031460.1.1	Tomato	plastid	28.98	18.73
Zm00001d017317_P001	Maize	mitochondrion	33.47	17.41
EES05467	Sorghum	mitochondrion	32.65	17.09
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	26.94	17.05
Os02t0633200-01	Rice	mitochondrion	31.43	16.92
TraesCS6A01G221200.1	Wheat	mitochondrion	31.43	16.67
TraesCS6B01G260000.1	Wheat	mitochondrion	31.43	16.67
TraesCS6D01G214000.1	Wheat	mitochondrion	31.43	16.67
Solyc02g079820.2.1	Tomato	cytosol, plastid	20.82	16.29
HORVU6Hr1G059290.1	Barley	cytosol	31.43	16.01
Solyc02g079830.1.1	Tomato	mitochondrion	25.71	15.75
Solyc10g005280.1.1	Tomato	mitochondrion	24.9	15.17
Solyc05g012250.1.1	Tomato	mitochondrion	28.57	13.59

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016787	GO:GO:0080156	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4BB67	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF506
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc02g085550.1	EnsemblPlants:Solyc02g085550.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276922B
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:48385042..48385837

Molecular Weight (calculated)

27812.7 Da

IEP (calculated)

9.263

GRAVY (calculated)

-0.177

Length

245 amino acids

Sequence
(BLAST)

001: MSSSIALRQA RHLTTTAAAV ASSPSTITIS ISKAKSKLKV EHDPDKAFEI YSSVYDRYVS SMSSRYAQEF TVKRLAKSHR FSDIENFLES HKNRPKIFIH
101: NSFLWCRRPV ISFNVLLSAC VRSKLYDCVP QLLDEISVKY GFLPDKVSYD ILIRSYCEMR SSKMAIKILK VIEEKSVEIT TITFTTILHS FYKKGKNDEA
201: EKVWNEMVNK GCGPDVGAYN VKIINIQGGD LEGVKALIEE MTMLD

Best Arabidopsis Sequence Match ( AT4G36680.1 )
(BLAST)

001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M065]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.