Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 52.94 | 41.54 |
| Bra028380.1-P | Field mustard | mitochondrion | 87.58 | 32.84 |
| CDY47165 | Canola | mitochondrion | 86.27 | 32.35 |
| CDY25328 | Canola | mitochondrion, plastid | 85.62 | 32.11 |
| AT1G61870.1 | Thale cress | mitochondrion | 79.08 | 29.66 |
| CDX97972 | Canola | cytosol | 52.29 | 28.67 |
| KRH20873 | Soybean | cytosol, mitochondrion | 23.53 | 28.35 |
| VIT_10s0116g00030.t01 | Wine grape | plastid | 61.44 | 23.74 |
| GSMUA_Achr6P00410_001 | Banana | mitochondrion | 54.25 | 23.58 |
| Solyc10g005280.1.1 | Tomato | mitochondrion | 58.17 | 22.14 |
| PGSC0003DMT400029367 | Potato | mitochondrion | 57.52 | 21.89 |
| KRH11411 | Soybean | nucleus | 53.59 | 21.13 |
| CDY49792 | Canola | plastid | 56.21 | 21.08 |
| Zm00001d043225_P001 | Maize | mitochondrion | 50.98 | 19.85 |
| Os01t0793200-01 | Rice | mitochondrion | 49.02 | 19.23 |
| EES01589 | Sorghum | mitochondrion | 49.02 | 19.13 |
| TraesCS3A01G326500.1 | Wheat | mitochondrion | 48.37 | 18.97 |
| TraesCS3B01G355800.1 | Wheat | mitochondrion | 47.71 | 18.72 |
| HORVU3Hr1G077780.1 | Barley | mitochondrion | 46.41 | 18.21 |
| TraesCS3D01G319900.1 | Wheat | mitochondrion | 32.03 | 14.5 |
| HORVU5Hr1G041750.1 | Barley | cytosol | 30.07 | 12.96 |
| CDY38649 | Canola | mitochondrion | 30.07 | 11.86 |
| CDY57688 | Canola | mitochondrion | 30.07 | 11.76 |
| CDY54310 | Canola | mitochondrion | 29.41 | 11.51 |
| CDY37572 | Canola | mitochondrion | 29.41 | 11.31 |
| CDY24774 | Canola | mitochondrion | 27.45 | 10.32 |
| CDY43367 | Canola | mitochondrion | 26.14 | 10.15 |
| CDY35471 | Canola | mitochondrion | 26.8 | 10.07 |
| CDY24208 | Canola | mitochondrion | 25.49 | 9.9 |
| CDX82550 | Canola | mitochondrion | 24.18 | 9.41 |
| CDY08267 | Canola | mitochondrion | 24.18 | 9.32 |
| CDY26081 | Canola | mitochondrion | 23.53 | 9.09 |
| CDY66741 | Canola | mitochondrion | 24.18 | 8.83 |
| CDY67618 | Canola | mitochondrion | 22.88 | 8.35 |
| VIT_10s0116g00090.t01 | Wine grape | mitochondrion | 13.73 | 8.24 |
| CDY66550 | Canola | mitochondrion | 15.69 | 8.03 |
| CDY24210 | Canola | plastid | 22.22 | 7.76 |
| CDY43368 | Canola | plastid | 22.22 | 7.74 |
| KRH20872 | Soybean | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY07260 | EnsemblPlantsGene:GSBRNA2T00124090001 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF579 |
| PFAM:PF01535 | PFAM:PF12854 | PFscan:PS51375 | ProteinID:CDY07260 | ProteinID:CDY07260.1 | TIGRFAMs:TIGR00756 |
| UniParc:UPI0004EDC7C3 | MapMan:35.1 | : | : | : | : |
Description
BnaC04g19110D
Coordinates
chrLK031976:+:503365..503919
Molecular Weight (calculated)
17357.2 Da
IEP (calculated)
9.491
GRAVY (calculated)
-0.427
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MERKGMKQTS STFGLMISGF YREDNKEDVL AMMKGRGISV GVSTHNIRIQ SLCKRKMSVE AKALLDGMKP NAVTYGHLIH GFCNEGEFDE AKKYLRVCMQ
101: KNWVPSFGIM KSLVNGLAKD SKVEEAKELI TQVKEKFTRN VDLWNEVETA FPQ
101: KNWVPSFGIM KSLVNGLAKD SKVEEAKELI TQVKEKFTRN VDLWNEVETA FPQ
001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ
Arabidopsis Description
PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.