Factsheet for GSMUA_Achr11P18590_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07260	Canola	cytosol	41.54	52.94
KRH20873	Soybean	cytosol, mitochondrion	24.62	37.8
GSMUA_Achr6P00410_001	Banana	mitochondrion	63.59	35.23
Bra019842.1-P	Field mustard	cytosol	49.74	34.77
CDX97972	Canola	cytosol	49.74	34.77
VIT_10s0116g00030.t01	Wine grape	plastid	56.41	27.78
Bra028380.1-P	Field mustard	mitochondrion	57.44	27.45
CDY25328	Canola	mitochondrion, plastid	57.44	27.45
CDY47165	Canola	mitochondrion	57.44	27.45
AT1G61870.1	Thale cress	mitochondrion	56.92	27.21
KRH11411	Soybean	nucleus	52.82	26.55
Solyc10g005280.1.1	Tomato	mitochondrion	53.33	25.87
AT1G11630.1	Thale cress	mitochondrion	52.82	25.43
PGSC0003DMT400029367	Potato	mitochondrion	51.79	25.12
CDY49792	Canola	plastid	52.31	25.0
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	26.67	18.98
GSMUA_Achr1P01950_001	Banana	mitochondrion	30.26	15.29
GSMUA_Achr10P...	Banana	mitochondrion	24.62	11.97
VIT_10s0116g00090.t01	Wine grape	mitochondrion	12.31	9.41
KRH20872	Soybean	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr11P18590_001	EnsemblPlants:GSMUA_Achr11T18590_001	EnsemblPlantsGene:GSMUA_Achr11G18590_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF579	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	UniParc:UPI0002961145	UniProt:M0RTD9
MapMan:35.1	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr11G18590_001]

Coordinates

chr11:-:19969272..19969859

Molecular Weight (calculated)

22849.5 Da

IEP (calculated)

9.485

GRAVY (calculated)

-0.138

Length

195 amino acids

Sequence
(BLAST)

001: MVRMRIKPNL TTFSVALAGF YREQLFDDIR KVLWLMKKHK CHAGLSIYNV RILSLCKLKK SNEAKELLKE MRMRGMKPNW VTYDHLILGF CIEGCLDEAK
101: VLFREMDKRG LVPESRCYFS LIYFLCKGGA FEMALEVCRK SMERNWVPCF SLMRELVNGL VSTSKFEEAR DIIAKVKEKF PTNAEMWREV EGTLP

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.