CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019842.1-P	Field mustard	cytosol	99.28	99.28
CDY49792	Canola	plastid	91.76	62.75
CDY07260	Canola	cytosol	28.67	52.29
AT1G11630.1	Thale cress	mitochondrion	73.48	50.62
GSMUA_Achr11P...	Banana	cytosol	34.77	49.74
CDY25328	Canola	mitochondrion, plastid	62.37	42.65
CDY47165	Canola	mitochondrion	62.01	42.4
KRH20873	Soybean	cytosol, mitochondrion	17.2	37.8
VIT_10s0116g00030.t01	Wine grape	plastid	51.97	36.62
Solyc10g005280.1.1	Tomato	mitochondrion	51.25	35.57
GSMUA_Achr6P00410_001	Banana	mitochondrion	44.44	35.23
PGSC0003DMT400029367	Potato	mitochondrion	50.18	34.83
KRH11411	Soybean	nucleus	47.31	34.02
Os01t0793200-01	Rice	mitochondrion	41.58	29.74
TraesCS3A01G326500.1	Wheat	mitochondrion	41.58	29.74
TraesCS3B01G355800.1	Wheat	mitochondrion	40.86	29.23
EES01589	Sorghum	mitochondrion	39.78	28.32
Zm00001d043225_P001	Maize	mitochondrion	39.78	28.24
HORVU3Hr1G077780.1	Barley	mitochondrion	39.43	28.21
TraesCS3D01G319900.1	Wheat	mitochondrion	33.33	27.51
VIT_10s0116g00090.t01	Wine grape	mitochondrion	23.3	25.49
HORVU5Hr1G041750.1	Barley	cytosol	29.03	22.82
CDY57688	Canola	mitochondrion	29.39	20.97
CDY54310	Canola	mitochondrion	28.67	20.46
CDY38649	Canola	mitochondrion	27.96	20.1
KRH20872	Soybean	mitochondrion	12.54	19.89
CDY35471	Canola	mitochondrion	28.32	19.41
CDY24774	Canola	mitochondrion	28.32	19.41
CDY37572	Canola	mitochondrion	27.6	19.35
CDY43368	Canola	plastid	29.75	18.91
CDY24210	Canola	plastid	29.39	18.72
CDY67618	Canola	mitochondrion	27.6	18.38
CDX82550	Canola	mitochondrion	25.81	18.32
CDY66741	Canola	mitochondrion	27.24	18.14
CDY08267	Canola	mitochondrion	25.45	17.88
CDY26081	Canola	mitochondrion	25.09	17.68
CDY24208	Canola	mitochondrion	24.73	17.51
CDY43367	Canola	mitochondrion	24.73	17.51
CDY66550	Canola	mitochondrion	17.2	16.05

Protein Annotations

EnsemblPlants:CDX97972	EnsemblPlantsGene:GSBRNA2T00105326001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX97972	ProteinID:CDX97972.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EEC9E9	MapMan:17.7.1.3.2	:	:

Description

BnaA06g07230D

Coordinates

chrLK031902:-:316479..317318

Molecular Weight (calculated)

32277.1 Da

IEP (calculated)

8.155

GRAVY (calculated)

-0.268

Length

279 amino acids

Sequence
(BLAST)

001: MLERSLQTFH DLERYEIRRT VKSLNALLLA CLAARDYEEA RRVYFETRKE YGGIEPDLET YNRIIKALCE SNSTGSSYSI VAEMERRRVK PRASTFGLMI
101: EGFYKEEKYD EVRRVVRLMR EFGVHVGIAT YNVMVRCLCE RKRTREAKAL LCGVMSTRMR PNSVTYSLLI HGFCSEGDLD EAMSVFEVMV KSGCKPGCEC
201: YFDLIRCLCK GGDFETALVL CRESMESHWV PSFSVMRWLV HGLVGSNKVD EAREVIAQVK HKFSRNVHLW NQVEADLSR

Best Arabidopsis Sequence Match ( AT1G11630.1 )
(BLAST)

001: MAFLFRIRTS EFILQKATQF RLKSSSSSIF TLKSLTSKQK KSRDTLSLLK SENNPDRILE ICRSTSLSPD YHVDRIIFSV AVVTLAREKH FVAVSQLLDG
101: FIQNQPDPKS ESFAVRAIIL YGRANMLDRS IQTFRNLEQY EIPRTVKSLN ALLFACLMAK DYKEANRVYL EMPKMYGIEP DLETYNRMIR VLCESGSTSS
201: SYSIVAEMER KWIKPTAASF GLMIDGFYKE EKFDEVRKVM RMMDEFGVHV GVATYNIMIQ CLCKRKKSAE AKALIDGVMS CRMRPNSVTY SLLIHGFCSE
301: ENLDEAMNLF EVMVCNGYKP DSECYFTLIH CLCKGGDFET ALILCRESME KNWVPSFSVM KWLVNGLASR SKVDEAKELI AVVKEKFTRN VDLWNEVEAA
401: LPLPQ

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g11630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAB4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.