CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043225_P001	Maize	mitochondrion	95.15	94.91
Os01t0793200-01	Rice	mitochondrion	84.95	85.38
TraesCS3B01G355800.1	Wheat	mitochondrion	82.4	82.82
TraesCS3A01G326500.1	Wheat	mitochondrion	82.14	82.56
TraesCS3D01G319900.1	Wheat	mitochondrion	71.17	82.54
HORVU3Hr1G077780.1	Barley	mitochondrion	81.38	81.79
GSMUA_Achr6P00410_001	Banana	mitochondrion	53.57	59.66
HORVU5Hr1G041750.1	Barley	cytosol	50.0	55.21
KRH11411	Soybean	nucleus	50.26	50.77
CDY07260	Canola	cytosol	19.13	49.02
Solyc10g005280.1.1	Tomato	mitochondrion	47.7	46.52
PGSC0003DMT400029367	Potato	mitochondrion	47.7	46.52
AT1G61870.1	Thale cress	mitochondrion	48.21	46.32
VIT_10s0116g00030.t01	Wine grape	plastid	46.68	46.21
CDY25328	Canola	mitochondrion, plastid	47.19	45.34
VIT_10s0116g00090.t01	Wine grape	mitochondrion	29.34	45.1
Bra028380.1-P	Field mustard	mitochondrion	46.94	45.1
CDY47165	Canola	mitochondrion	46.94	45.1
KRH20872	Soybean	mitochondrion	18.88	42.05
AT1G11630.1	Thale cress	mitochondrion	42.6	41.23
KRH20873	Soybean	cytosol, mitochondrion	13.01	40.16
Bra019842.1-P	Field mustard	cytosol	28.32	39.78
CDX97972	Canola	cytosol	28.32	39.78
CDY49792	Canola	plastid	40.82	39.22
EES07814	Sorghum	mitochondrion, plastid	26.53	24.82
EES05467	Sorghum	mitochondrion	27.55	23.08
EES01579	Sorghum	mitochondrion	24.74	22.61
EER91465	Sorghum	mitochondrion	25.26	22.5
EES01580	Sorghum	mitochondrion	24.49	21.87
EES15434	Sorghum	plastid	25.51	21.51
EER95222	Sorghum	mitochondrion	23.21	18.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.2	EntrezGene:8082382	UniProt:C5XMD0	EnsemblPlants:EES01589	ProteinID:EES01589
ProteinID:EES01589.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3003G322200
SUPFAM:SSF81901	unigene:Sbi.7640	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8441B	RefSeq:XP_002456469.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:64931618..64934999

Molecular Weight (calculated)

42960.8 Da

IEP (calculated)

9.018

GRAVY (calculated)

-0.179

Length

392 amino acids

Sequence
(BLAST)

001: MAAAVRHIVR RRLSTAATTT PVPTPGSILN PSSPSTPLTS REKTRLAISL LKSSPPPPPD QILSICRAAA LTPETHIDRI ALSLAASKLS SAPDTLRDLA
101: STVLTPRHAP HAIVLFGQAN LLPDAISTFQ SSPSTRSLNA LIFACIVSGN HTEAARVFQT FPDAHGVKPN TETFNAIIKS FAESGTIRSF YSVFDEMCKK
201: GLKPNATTFT TALAGFYKEE RFDDVGKVLE LMKKNGCGES LPVYNVRVQS LCKLGRSGEA RALVDEMVKK GTKPSWVTYN HLIYGFCKEG DLEEAKRLYK
301: EMGRKGLVGD INFYFMLIHY LCKGDDFDTA LGVYNEIAAK NWVPCFSTMK MLVNGLAGSS RIDEAKGIIE KMKEKFPDKT EGWKEVEEAL PH

Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)

001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ

Arabidopsis Description

PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.